Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3867 and HP15_3868 are separated by 2 nucleotides HP15_3868 and HP15_3869 are separated by 150 nucleotides
HP15_3867: HP15_3867 - SPFH domain, Band 7 family protein, at 4,093,705 to 4,094,739
_3867
HP15_3868: HP15_3868 - nodulation efficiency, NfeD-like protein, at 4,094,742 to 4,095,248
_3868
HP15_3869: HP15_3869 - short-chain dehydrogenase/reductase SDR, at 4,095,399 to 4,096,220
_3869
Position (kb)
4094
4095
4096 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4093.824 kb on - strand, within HP15_3867 at 4093.824 kb on - strand, within HP15_3867 at 4093.871 kb on + strand, within HP15_3867 at 4093.996 kb on + strand, within HP15_3867 at 4094.059 kb on - strand, within HP15_3867 at 4094.180 kb on + strand, within HP15_3867 at 4094.251 kb on - strand, within HP15_3867 at 4094.310 kb on + strand, within HP15_3867 at 4094.320 kb on + strand, within HP15_3867 at 4094.520 kb on - strand, within HP15_3867 at 4094.631 kb on + strand, within HP15_3867 at 4094.665 kb on - strand at 4094.705 kb on + strand at 4094.987 kb on + strand, within HP15_3868 at 4094.995 kb on - strand, within HP15_3868 at 4095.095 kb on - strand, within HP15_3868 at 4095.224 kb on - strand at 4095.246 kb on - strand at 4095.403 kb on - strand at 4095.442 kb on + strand at 4095.453 kb on + strand at 4095.461 kb on - strand at 4095.461 kb on - strand at 4095.478 kb on - strand at 4095.494 kb on - strand, within HP15_3869 at 4095.499 kb on + strand, within HP15_3869 at 4095.509 kb on + strand, within HP15_3869 at 4095.637 kb on + strand, within HP15_3869 at 4095.645 kb on - strand, within HP15_3869 at 4095.683 kb on + strand, within HP15_3869 at 4095.698 kb on + strand, within HP15_3869 at 4095.761 kb on - strand, within HP15_3869 at 4095.780 kb on + strand, within HP15_3869 at 4095.831 kb on + strand, within HP15_3869 at 4095.901 kb on - strand, within HP15_3869 at 4096.032 kb on + strand, within HP15_3869 at 4096.046 kb on + strand, within HP15_3869 at 4096.158 kb on + strand at 4096.166 kb on - strand at 4096.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 4,093,824 - HP15_3867 0.11 -0.2 4,093,824 - HP15_3867 0.11 -1.2 4,093,871 + HP15_3867 0.16 +0.4 4,093,996 + HP15_3867 0.28 +0.9 4,094,059 - HP15_3867 0.34 +0.2 4,094,180 + HP15_3867 0.46 +0.6 4,094,251 - HP15_3867 0.53 -0.2 4,094,310 + HP15_3867 0.58 +1.0 4,094,320 + HP15_3867 0.59 -0.2 4,094,520 - HP15_3867 0.79 -1.9 4,094,631 + HP15_3867 0.89 +0.4 4,094,665 - -3.8 4,094,705 + +2.2 4,094,987 + HP15_3868 0.48 +0.6 4,094,995 - HP15_3868 0.50 -0.0 4,095,095 - HP15_3868 0.70 +0.8 4,095,224 - +2.7 4,095,246 - -4.2 4,095,403 - +3.0 4,095,442 + -0.7 4,095,453 + +0.4 4,095,461 - -3.3 4,095,461 - +0.0 4,095,478 - -1.0 4,095,494 - HP15_3869 0.12 +0.2 4,095,499 + HP15_3869 0.12 +1.2 4,095,509 + HP15_3869 0.13 +0.1 4,095,637 + HP15_3869 0.29 +0.1 4,095,645 - HP15_3869 0.30 +0.6 4,095,683 + HP15_3869 0.35 +0.2 4,095,698 + HP15_3869 0.36 +0.0 4,095,761 - HP15_3869 0.44 +0.9 4,095,780 + HP15_3869 0.46 -0.3 4,095,831 + HP15_3869 0.53 -0.2 4,095,901 - HP15_3869 0.61 +0.2 4,096,032 + HP15_3869 0.77 +0.4 4,096,046 + HP15_3869 0.79 +1.2 4,096,158 + -0.2 4,096,166 - -0.3 4,096,168 - -2.4
Or see this region's nucleotide sequence