Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00190 and PGA1_262p00200 are separated by 68 nucleotides PGA1_262p00200 and PGA1_262p00210 are separated by 72 nucleotides
PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694
_262p00190
PGA1_262p00200: PGA1_262p00200 - transcriptional regulator, LysR family, at 23,763 to 24,689
_262p00200
PGA1_262p00210: PGA1_262p00210 - alcohol dehydrogenase AlkJ, at 24,762 to 26,420
_262p00210
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 23.009 kb on - strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.073 kb on + strand, within PGA1_262p00190 at 23.081 kb on - strand, within PGA1_262p00190 at 23.218 kb on + strand, within PGA1_262p00190 at 23.519 kb on + strand, within PGA1_262p00190 at 23.632 kb on - strand at 23.649 kb on - strand at 23.649 kb on - strand at 23.728 kb on - strand at 23.762 kb on - strand at 23.804 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.855 kb on + strand at 24.111 kb on - strand, within PGA1_262p00200 at 24.131 kb on + strand, within PGA1_262p00200 at 24.139 kb on - strand, within PGA1_262p00200 at 24.154 kb on - strand, within PGA1_262p00200 at 24.309 kb on - strand, within PGA1_262p00200 at 24.374 kb on + strand, within PGA1_262p00200 at 24.489 kb on - strand, within PGA1_262p00200 at 24.491 kb on + strand, within PGA1_262p00200 at 24.562 kb on - strand, within PGA1_262p00200 at 24.569 kb on + strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.613 kb on - strand at 24.642 kb on + strand at 24.710 kb on - strand at 24.870 kb on + strand at 25.035 kb on + strand, within PGA1_262p00210 at 25.299 kb on + strand, within PGA1_262p00210 at 25.302 kb on - strand, within PGA1_262p00210 at 25.318 kb on - strand, within PGA1_262p00210 at 25.450 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.672 kb on - strand, within PGA1_262p00210 at 25.677 kb on - strand, within PGA1_262p00210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 23,009 - PGA1_262p00190 0.48 -1.7 23,052 + PGA1_262p00190 0.51 -0.1 23,052 + PGA1_262p00190 0.51 -1.7 23,052 + PGA1_262p00190 0.51 -0.3 23,052 + PGA1_262p00190 0.51 +2.3 23,052 + PGA1_262p00190 0.51 +2.6 23,060 - PGA1_262p00190 0.52 -0.8 23,060 - PGA1_262p00190 0.52 +0.5 23,060 - PGA1_262p00190 0.52 -0.4 23,060 - PGA1_262p00190 0.52 -0.5 23,060 - PGA1_262p00190 0.52 -2.2 23,060 - PGA1_262p00190 0.52 -1.8 23,060 - PGA1_262p00190 0.52 +2.7 23,060 - PGA1_262p00190 0.52 +1.3 23,073 + PGA1_262p00190 0.53 +0.5 23,081 - PGA1_262p00190 0.53 +2.4 23,218 + PGA1_262p00190 0.64 +0.2 23,519 + PGA1_262p00190 0.87 -1.9 23,632 - +1.6 23,649 - -0.9 23,649 - +0.6 23,728 - -3.4 23,762 - -0.9 23,804 + -2.5 23,838 + -1.9 23,838 + +0.6 23,855 + +0.0 24,111 - PGA1_262p00200 0.38 -2.4 24,131 + PGA1_262p00200 0.40 -1.2 24,139 - PGA1_262p00200 0.41 -2.2 24,154 - PGA1_262p00200 0.42 -1.2 24,309 - PGA1_262p00200 0.59 +1.6 24,374 + PGA1_262p00200 0.66 +0.5 24,489 - PGA1_262p00200 0.78 +1.7 24,491 + PGA1_262p00200 0.79 +1.5 24,562 - PGA1_262p00200 0.86 -0.2 24,569 + PGA1_262p00200 0.87 +1.3 24,577 - PGA1_262p00200 0.88 +0.4 24,577 - PGA1_262p00200 0.88 -1.0 24,577 - PGA1_262p00200 0.88 +0.7 24,577 - PGA1_262p00200 0.88 +0.4 24,613 - +1.6 24,642 + +0.9 24,710 - -0.1 24,870 + +0.1 25,035 + PGA1_262p00210 0.16 +0.6 25,299 + PGA1_262p00210 0.32 +1.9 25,302 - PGA1_262p00210 0.33 -2.9 25,318 - PGA1_262p00210 0.34 +2.0 25,450 + PGA1_262p00210 0.41 -1.9 25,474 + PGA1_262p00210 0.43 -0.1 25,474 + PGA1_262p00210 0.43 -2.5 25,474 + PGA1_262p00210 0.43 +0.4 25,474 + PGA1_262p00210 0.43 +1.6 25,672 - PGA1_262p00210 0.55 +0.2 25,677 - PGA1_262p00210 0.55 +0.5
Or see this region's nucleotide sequence