Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00090

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00070 and PGA1_262p00080 are separated by 28 nucleotidesPGA1_262p00080 and PGA1_262p00090 are separated by 7 nucleotidesPGA1_262p00090 and PGA1_262p00100 are separated by 142 nucleotides PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258 _262p00070 PGA1_262p00080: PGA1_262p00080 - hypothetical protein, at 9,287 to 10,054 _262p00080 PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173 _262p00090 PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404 _262p00100 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.079 kb on - strand, within PGA1_262p00070at 9.103 kb on - strand, within PGA1_262p00070at 9.252 kb on + strandat 9.376 kb on - strand, within PGA1_262p00080at 9.472 kb on - strand, within PGA1_262p00080at 9.540 kb on - strand, within PGA1_262p00080at 9.777 kb on - strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.779 kb on + strand, within PGA1_262p00080at 9.855 kb on - strand, within PGA1_262p00080at 9.965 kb on - strand, within PGA1_262p00080at 9.983 kb on + strandat 10.051 kb on + strandat 10.065 kb on + strandat 10.123 kb on + strandat 10.131 kb on - strandat 10.213 kb on + strandat 10.221 kb on - strandat 10.545 kb on - strand, within PGA1_262p00090at 10.734 kb on + strand, within PGA1_262p00090at 10.857 kb on - strand, within PGA1_262p00090at 11.039 kb on - strand, within PGA1_262p00090at 11.162 kb on + strand, within PGA1_262p00090at 11.170 kb on - strand, within PGA1_262p00090at 11.262 kb on - strand, within PGA1_262p00090at 11.275 kb on + strand, within PGA1_262p00090at 11.352 kb on - strand, within PGA1_262p00090at 11.580 kb on - strand, within PGA1_262p00090at 11.610 kb on + strand, within PGA1_262p00090at 11.646 kb on + strand, within PGA1_262p00090at 11.654 kb on - strand, within PGA1_262p00090at 11.843 kb on + strand, within PGA1_262p00090at 11.875 kb on - strand, within PGA1_262p00090at 11.877 kb on + strand, within PGA1_262p00090at 12.103 kb on - strandat 12.157 kb on - strandat 12.179 kb on + strandat 12.187 kb on - strandat 12.296 kb on - strandat 12.554 kb on + strand, within PGA1_262p00100at 12.644 kb on + strand, within PGA1_262p00100at 12.644 kb on + strand, within PGA1_262p00100at 12.853 kb on + strand, within PGA1_262p00100at 12.860 kb on - strand, within PGA1_262p00100at 12.942 kb on + strand, within PGA1_262p00100at 13.045 kb on + strand, within PGA1_262p00100at 13.052 kb on + strand, within PGA1_262p00100

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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9,079 - PGA1_262p00070 0.86 +2.7
9,103 - PGA1_262p00070 0.88 -2.6
9,252 + +1.3
9,376 - PGA1_262p00080 0.12 +1.1
9,472 - PGA1_262p00080 0.24 +1.9
9,540 - PGA1_262p00080 0.33 -0.5
9,777 - PGA1_262p00080 0.64 +1.3
9,779 + PGA1_262p00080 0.64 +0.9
9,779 + PGA1_262p00080 0.64 +0.2
9,855 - PGA1_262p00080 0.74 +1.1
9,965 - PGA1_262p00080 0.88 -2.0
9,983 + +0.1
10,051 + -1.1
10,065 + +1.1
10,123 + -0.6
10,131 - -0.5
10,213 + +1.5
10,221 - +1.1
10,545 - PGA1_262p00090 0.23 +0.4
10,734 + PGA1_262p00090 0.32 -2.1
10,857 - PGA1_262p00090 0.38 +1.4
11,039 - PGA1_262p00090 0.46 -0.5
11,162 + PGA1_262p00090 0.52 +1.0
11,170 - PGA1_262p00090 0.52 -1.7
11,262 - PGA1_262p00090 0.57 +2.4
11,275 + PGA1_262p00090 0.57 -0.6
11,352 - PGA1_262p00090 0.61 +0.7
11,580 - PGA1_262p00090 0.72 +0.4
11,610 + PGA1_262p00090 0.73 -3.4
11,646 + PGA1_262p00090 0.75 +1.4
11,654 - PGA1_262p00090 0.75 +1.9
11,843 + PGA1_262p00090 0.84 +1.3
11,875 - PGA1_262p00090 0.86 +1.7
11,877 + PGA1_262p00090 0.86 +2.2
12,103 - +1.5
12,157 - +1.3
12,179 + +0.7
12,187 - -2.1
12,296 - -0.9
12,554 + PGA1_262p00100 0.22 -1.9
12,644 + PGA1_262p00100 0.30 -2.4
12,644 + PGA1_262p00100 0.30 +0.8
12,853 + PGA1_262p00100 0.49 -0.3
12,860 - PGA1_262p00100 0.50 -2.5
12,942 + PGA1_262p00100 0.57 -1.9
13,045 + PGA1_262p00100 0.67 -0.5
13,052 + PGA1_262p00100 0.68 +0.7

Or see this region's nucleotide sequence