Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_336 and HP15_337 are separated by 108 nucleotides HP15_337 and HP15_338 overlap by 20 nucleotides
HP15_336: HP15_336 - conserved hypothetical protein, at 331,871 to 333,457
_336
HP15_337: HP15_337 - hypothetical protein, at 333,566 to 333,688
_337
HP15_338: HP15_338 - penicillin-binding protein 1B, at 333,669 to 335,909
_338
Position (kb) 333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 332.675 kb on + strand, within HP15_336 at 332.675 kb on + strand, within HP15_336 at 332.713 kb on + strand, within HP15_336 at 332.793 kb on + strand, within HP15_336 at 332.934 kb on + strand, within HP15_336 at 333.012 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.240 kb on + strand, within HP15_336 at 333.245 kb on + strand, within HP15_336 at 333.406 kb on + strand at 333.406 kb on + strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.414 kb on - strand at 333.455 kb on - strand at 333.475 kb on + strand at 333.618 kb on - strand, within HP15_337 at 333.691 kb on + strand at 333.709 kb on + strand at 333.801 kb on - strand at 333.980 kb on + strand, within HP15_338 at 334.061 kb on + strand, within HP15_338 at 334.208 kb on + strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.231 kb on - strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.242 kb on + strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.410 kb on - strand, within HP15_338 at 334.462 kb on - strand, within HP15_338
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 332,675 + HP15_336 0.51 +0.4 332,675 + HP15_336 0.51 +0.7 332,713 + HP15_336 0.53 -3.2 332,793 + HP15_336 0.58 -0.1 332,934 + HP15_336 0.67 -0.5 333,012 + HP15_336 0.72 -0.5 333,240 + HP15_336 0.86 -1.8 333,240 + HP15_336 0.86 +0.7 333,245 + HP15_336 0.87 -0.3 333,406 + -1.0 333,406 + +0.9 333,414 - +1.5 333,414 - -0.4 333,414 - +0.1 333,414 - -0.1 333,455 - +0.8 333,475 + +0.1 333,618 - HP15_337 0.42 -2.5 333,691 + -1.8 333,709 + +1.0 333,801 - -1.4 333,980 + HP15_338 0.14 -0.2 334,061 + HP15_338 0.17 -0.7 334,208 + HP15_338 0.24 +2.7 334,231 - HP15_338 0.25 -0.1 334,231 - HP15_338 0.25 -0.2 334,242 + HP15_338 0.26 +3.9 334,242 + HP15_338 0.26 -4.0 334,410 - HP15_338 0.33 -0.2 334,410 - HP15_338 0.33 +1.6 334,462 - HP15_338 0.35 +1.6
Or see this region's nucleotide sequence