Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3261 and HP15_3262 overlap by 1 nucleotides HP15_3262 and HP15_3263 are separated by 64 nucleotides
HP15_3261: HP15_3261 - efflux transporter, RND family, MFP subunit, at 3,414,443 to 3,415,543
_3261
HP15_3262: HP15_3262 - multidrug resistance protein, at 3,415,543 to 3,418,632
_3262
HP15_3263: HP15_3263 - transcriptional regulator, AraC family-like protein, at 3,418,697 to 3,419,662
_3263
Position (kb)
3415
3416
3417
3418
3419 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 3414.731 kb on + strand, within HP15_3261 at 3414.731 kb on + strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.822 kb on + strand, within HP15_3261 at 3414.950 kb on + strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.133 kb on - strand, within HP15_3261 at 3415.136 kb on + strand, within HP15_3261 at 3415.163 kb on - strand, within HP15_3261 at 3415.183 kb on + strand, within HP15_3261 at 3415.184 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.203 kb on + strand, within HP15_3261 at 3415.221 kb on - strand, within HP15_3261 at 3415.303 kb on - strand, within HP15_3261 at 3415.559 kb on + strand at 3415.660 kb on - strand at 3415.706 kb on + strand at 3415.706 kb on + strand at 3415.714 kb on - strand at 3415.850 kb on - strand at 3415.850 kb on - strand at 3415.910 kb on + strand, within HP15_3262 at 3415.951 kb on + strand, within HP15_3262 at 3416.018 kb on + strand, within HP15_3262 at 3416.023 kb on + strand, within HP15_3262 at 3416.028 kb on + strand, within HP15_3262 at 3416.182 kb on + strand, within HP15_3262 at 3416.201 kb on - strand, within HP15_3262 at 3416.280 kb on + strand, within HP15_3262 at 3416.288 kb on - strand, within HP15_3262 at 3416.290 kb on + strand, within HP15_3262 at 3416.290 kb on + strand, within HP15_3262 at 3416.328 kb on - strand, within HP15_3262 at 3416.364 kb on - strand, within HP15_3262 at 3416.433 kb on + strand, within HP15_3262 at 3416.591 kb on + strand, within HP15_3262 at 3416.632 kb on + strand, within HP15_3262 at 3416.701 kb on - strand, within HP15_3262 at 3416.734 kb on - strand, within HP15_3262 at 3416.744 kb on + strand, within HP15_3262 at 3416.816 kb on - strand, within HP15_3262 at 3416.897 kb on + strand, within HP15_3262 at 3416.927 kb on + strand, within HP15_3262 at 3416.937 kb on + strand, within HP15_3262 at 3416.945 kb on - strand, within HP15_3262 at 3416.945 kb on - strand, within HP15_3262 at 3417.085 kb on + strand, within HP15_3262 at 3417.085 kb on + strand, within HP15_3262 at 3417.093 kb on - strand, within HP15_3262 at 3417.194 kb on + strand, within HP15_3262 at 3417.414 kb on + strand, within HP15_3262 at 3417.536 kb on + strand, within HP15_3262 at 3417.542 kb on - strand, within HP15_3262 at 3417.544 kb on - strand, within HP15_3262 at 3417.588 kb on - strand, within HP15_3262 at 3417.878 kb on + strand, within HP15_3262 at 3417.897 kb on - strand, within HP15_3262 at 3417.898 kb on - strand, within HP15_3262 at 3418.023 kb on + strand, within HP15_3262 at 3418.031 kb on - strand, within HP15_3262 at 3418.031 kb on - strand, within HP15_3262 at 3418.066 kb on + strand, within HP15_3262 at 3418.066 kb on + strand, within HP15_3262 at 3418.074 kb on - strand, within HP15_3262 at 3418.074 kb on - strand, within HP15_3262 at 3418.213 kb on + strand, within HP15_3262 at 3418.252 kb on + strand, within HP15_3262 at 3418.538 kb on + strand at 3418.585 kb on - strand at 3418.603 kb on - strand at 3418.645 kb on + strand at 3418.837 kb on - strand, within HP15_3263 at 3418.856 kb on + strand, within HP15_3263 at 3418.872 kb on - strand, within HP15_3263 at 3418.909 kb on - strand, within HP15_3263 at 3419.109 kb on + strand, within HP15_3263 at 3419.109 kb on + strand, within HP15_3263 at 3419.117 kb on - strand, within HP15_3263 at 3419.117 kb on - strand, within HP15_3263 at 3419.156 kb on + strand, within HP15_3263 at 3419.176 kb on - strand, within HP15_3263 at 3419.229 kb on - strand, within HP15_3263 at 3419.301 kb on - strand, within HP15_3263 at 3419.340 kb on + strand, within HP15_3263 at 3419.362 kb on - strand, within HP15_3263 at 3419.419 kb on + strand, within HP15_3263 at 3419.427 kb on - strand, within HP15_3263 at 3419.457 kb on - strand, within HP15_3263 at 3419.506 kb on - strand, within HP15_3263 at 3419.570 kb on - strand at 3419.594 kb on - strand at 3419.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,414,731 + HP15_3261 0.26 -1.8 3,414,731 + HP15_3261 0.26 -3.4 3,414,739 - HP15_3261 0.27 -2.1 3,414,739 - HP15_3261 0.27 -1.6 3,414,822 + HP15_3261 0.34 -2.0 3,414,950 + HP15_3261 0.46 -1.8 3,415,061 - HP15_3261 0.56 -2.1 3,415,061 - HP15_3261 0.56 +0.9 3,415,133 - HP15_3261 0.63 -3.3 3,415,136 + HP15_3261 0.63 -3.3 3,415,163 - HP15_3261 0.65 -5.5 3,415,183 + HP15_3261 0.67 -4.3 3,415,184 - HP15_3261 0.67 -0.1 3,415,201 - HP15_3261 0.69 -2.0 3,415,201 - HP15_3261 0.69 -3.0 3,415,201 - HP15_3261 0.69 -2.5 3,415,203 + HP15_3261 0.69 -3.5 3,415,221 - HP15_3261 0.71 -1.5 3,415,303 - HP15_3261 0.78 +0.2 3,415,559 + -5.8 3,415,660 - -2.2 3,415,706 + +0.2 3,415,706 + -2.6 3,415,714 - -2.5 3,415,850 - -1.4 3,415,850 - -3.6 3,415,910 + HP15_3262 0.12 -2.0 3,415,951 + HP15_3262 0.13 -4.6 3,416,018 + HP15_3262 0.15 -1.5 3,416,023 + HP15_3262 0.16 -2.6 3,416,028 + HP15_3262 0.16 -1.7 3,416,182 + HP15_3262 0.21 -3.3 3,416,201 - HP15_3262 0.21 -2.5 3,416,280 + HP15_3262 0.24 -0.8 3,416,288 - HP15_3262 0.24 -3.7 3,416,290 + HP15_3262 0.24 -5.5 3,416,290 + HP15_3262 0.24 -3.3 3,416,328 - HP15_3262 0.25 -3.0 3,416,364 - HP15_3262 0.27 -3.1 3,416,433 + HP15_3262 0.29 -1.1 3,416,591 + HP15_3262 0.34 -2.4 3,416,632 + HP15_3262 0.35 -3.0 3,416,701 - HP15_3262 0.37 -4.1 3,416,734 - HP15_3262 0.39 -4.8 3,416,744 + HP15_3262 0.39 -2.9 3,416,816 - HP15_3262 0.41 -2.4 3,416,897 + HP15_3262 0.44 -3.0 3,416,927 + HP15_3262 0.45 -1.5 3,416,937 + HP15_3262 0.45 -2.7 3,416,945 - HP15_3262 0.45 -0.6 3,416,945 - HP15_3262 0.45 -1.9 3,417,085 + HP15_3262 0.50 -2.6 3,417,085 + HP15_3262 0.50 -1.2 3,417,093 - HP15_3262 0.50 -2.7 3,417,194 + HP15_3262 0.53 -1.9 3,417,414 + HP15_3262 0.61 -2.1 3,417,536 + HP15_3262 0.64 -2.0 3,417,542 - HP15_3262 0.65 -2.5 3,417,544 - HP15_3262 0.65 -2.9 3,417,588 - HP15_3262 0.66 -3.3 3,417,878 + HP15_3262 0.76 -3.3 3,417,897 - HP15_3262 0.76 -2.2 3,417,898 - HP15_3262 0.76 +3.5 3,418,023 + HP15_3262 0.80 -1.8 3,418,031 - HP15_3262 0.81 -2.3 3,418,031 - HP15_3262 0.81 -3.9 3,418,066 + HP15_3262 0.82 -2.3 3,418,066 + HP15_3262 0.82 -2.4 3,418,074 - HP15_3262 0.82 -1.7 3,418,074 - HP15_3262 0.82 -2.0 3,418,213 + HP15_3262 0.86 -4.5 3,418,252 + HP15_3262 0.88 -3.1 3,418,538 + -0.5 3,418,585 - -1.4 3,418,603 - -1.2 3,418,645 + -0.1 3,418,837 - HP15_3263 0.14 -3.7 3,418,856 + HP15_3263 0.16 -1.8 3,418,872 - HP15_3263 0.18 -0.1 3,418,909 - HP15_3263 0.22 +0.4 3,419,109 + HP15_3263 0.43 -0.8 3,419,109 + HP15_3263 0.43 -2.8 3,419,117 - HP15_3263 0.43 +0.5 3,419,117 - HP15_3263 0.43 +0.4 3,419,156 + HP15_3263 0.48 -0.4 3,419,176 - HP15_3263 0.50 -0.8 3,419,229 - HP15_3263 0.55 -0.1 3,419,301 - HP15_3263 0.63 +0.8 3,419,340 + HP15_3263 0.67 -0.4 3,419,362 - HP15_3263 0.69 -1.0 3,419,419 + HP15_3263 0.75 -0.8 3,419,427 - HP15_3263 0.76 +0.1 3,419,457 - HP15_3263 0.79 -1.8 3,419,506 - HP15_3263 0.84 -0.5 3,419,570 - -0.3 3,419,594 - +0.4 3,419,596 + +0.3
Or see this region's nucleotide sequence