Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3002 and HP15_3003 are separated by 143 nucleotides HP15_3003 and HP15_3004 are separated by 144 nucleotides HP15_3004 and HP15_3005 are separated by 144 nucleotides
HP15_3002: HP15_3002 - TonB-dependent receptor, at 3,145,920 to 3,147,929
_3002
HP15_3003: HP15_3003 - protein-export protein SecB, at 3,148,073 to 3,148,576
_3003
HP15_3004: HP15_3004 - rhodanese domain protein, at 3,148,721 to 3,149,137
_3004
HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832
_3005
Position (kb)
3148
3149
3150 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3148.196 kb on + strand, within HP15_3003 at 3148.289 kb on + strand, within HP15_3003 at 3148.331 kb on + strand, within HP15_3003 at 3148.388 kb on - strand, within HP15_3003 at 3148.388 kb on - strand, within HP15_3003 at 3148.395 kb on + strand, within HP15_3003 at 3148.470 kb on + strand, within HP15_3003 at 3148.487 kb on + strand, within HP15_3003 at 3148.609 kb on + strand at 3148.628 kb on + strand at 3148.634 kb on - strand at 3148.641 kb on - strand at 3148.877 kb on - strand, within HP15_3004 at 3148.910 kb on + strand, within HP15_3004 at 3148.910 kb on + strand, within HP15_3004 at 3149.139 kb on + strand at 3149.167 kb on + strand at 3149.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,148,196 + HP15_3003 0.24 -0.6 3,148,289 + HP15_3003 0.43 -1.6 3,148,331 + HP15_3003 0.51 -0.2 3,148,388 - HP15_3003 0.62 -1.2 3,148,388 - HP15_3003 0.62 +0.7 3,148,395 + HP15_3003 0.64 -0.5 3,148,470 + HP15_3003 0.79 +1.7 3,148,487 + HP15_3003 0.82 -0.2 3,148,609 + -0.3 3,148,628 + -1.8 3,148,634 - -2.0 3,148,641 - +1.3 3,148,877 - HP15_3004 0.37 +3.8 3,148,910 + HP15_3004 0.45 -0.1 3,148,910 + HP15_3004 0.45 +2.4 3,149,139 + +1.8 3,149,167 + -2.1 3,149,167 + -0.3
Or see this region's nucleotide sequence