Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2971 and HP15_2972 are separated by 215 nucleotides HP15_2972 and HP15_2973 are separated by 98 nucleotides HP15_2973 and HP15_2974 are separated by 166 nucleotides HP15_2974 and HP15_2975 are separated by 59 nucleotides
HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154
_2971
HP15_2972: HP15_2972 - cyclic nucleotide-binding protein, at 3,116,370 to 3,117,029
_2972
HP15_2973: HP15_2973 - flavoprotein wrbA, at 3,117,128 to 3,117,727
_2973
HP15_2974: HP15_2974 - channel protein, hemolysin III family, at 3,117,894 to 3,118,595
_2974
HP15_2975: HP15_2975 - protein belonging to uncharacterized protein family UPF0310, at 3,118,655 to 3,119,113
_2975
Position (kb)
3117
3118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3116.160 kb on - strand at 3116.173 kb on + strand at 3116.291 kb on + strand at 3116.352 kb on - strand at 3116.403 kb on - strand at 3116.578 kb on + strand, within HP15_2972 at 3116.802 kb on + strand, within HP15_2972 at 3116.936 kb on + strand, within HP15_2972 at 3116.977 kb on + strand at 3117.022 kb on + strand at 3117.042 kb on + strand at 3117.265 kb on + strand, within HP15_2973 at 3117.489 kb on + strand, within HP15_2973 at 3117.537 kb on + strand, within HP15_2973 at 3117.654 kb on - strand, within HP15_2973 at 3117.668 kb on - strand at 3117.728 kb on + strand at 3117.775 kb on + strand at 3117.858 kb on + strand at 3117.947 kb on - strand at 3118.061 kb on + strand, within HP15_2974 at 3118.069 kb on - strand, within HP15_2974 at 3118.112 kb on + strand, within HP15_2974 at 3118.120 kb on - strand, within HP15_2974 at 3118.135 kb on - strand, within HP15_2974 at 3118.139 kb on + strand, within HP15_2974 at 3118.169 kb on - strand, within HP15_2974 at 3118.319 kb on - strand, within HP15_2974 at 3118.458 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.500 kb on + strand, within HP15_2974 at 3118.501 kb on - strand, within HP15_2974 at 3118.508 kb on - strand, within HP15_2974 at 3118.508 kb on - strand, within HP15_2974 at 3118.565 kb on + strand at 3118.565 kb on + strand at 3118.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,116,160 - -0.8 3,116,173 + +0.8 3,116,291 + -1.6 3,116,352 - +0.3 3,116,403 - +1.2 3,116,578 + HP15_2972 0.32 -1.2 3,116,802 + HP15_2972 0.65 -0.8 3,116,936 + HP15_2972 0.86 -1.8 3,116,977 + +0.3 3,117,022 + +0.3 3,117,042 + +0.2 3,117,265 + HP15_2973 0.23 +2.2 3,117,489 + HP15_2973 0.60 -1.4 3,117,537 + HP15_2973 0.68 -1.9 3,117,654 - HP15_2973 0.88 +0.4 3,117,668 - -3.2 3,117,728 + +0.1 3,117,775 + +0.2 3,117,858 + +0.3 3,117,947 - -0.5 3,118,061 + HP15_2974 0.24 -1.8 3,118,069 - HP15_2974 0.25 +0.7 3,118,112 + HP15_2974 0.31 +1.2 3,118,120 - HP15_2974 0.32 +0.5 3,118,135 - HP15_2974 0.34 +0.5 3,118,139 + HP15_2974 0.35 -0.3 3,118,169 - HP15_2974 0.39 -2.2 3,118,319 - HP15_2974 0.61 +1.7 3,118,458 + HP15_2974 0.80 -1.2 3,118,500 + HP15_2974 0.86 +0.6 3,118,500 + HP15_2974 0.86 +2.2 3,118,500 + HP15_2974 0.86 +0.5 3,118,500 + HP15_2974 0.86 -1.8 3,118,500 + HP15_2974 0.86 -0.9 3,118,500 + HP15_2974 0.86 -0.8 3,118,501 - HP15_2974 0.86 +0.8 3,118,508 - HP15_2974 0.87 +0.4 3,118,508 - HP15_2974 0.87 -0.0 3,118,565 + +0.9 3,118,565 + +0.4 3,118,621 + -0.2
Or see this region's nucleotide sequence