Strain Fitness in Marinobacter adhaerens HP15 around HP15_2964

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2963 and HP15_2964 overlap by 11 nucleotidesHP15_2964 and HP15_2965 are separated by 47 nucleotidesHP15_2965 and HP15_2966 overlap by 4 nucleotides HP15_2963: HP15_2963 - phosphoglycolate phosphatase, at 3,108,035 to 3,109,684 _2963 HP15_2964: HP15_2964 - hypothetical protein, at 3,109,674 to 3,109,802 _2964 HP15_2965: HP15_2965 - inner membrane protein, at 3,109,850 to 3,110,689 _2965 HP15_2966: HP15_2966 - electron transport protein SCO1/SenC, at 3,110,686 to 3,111,279 _2966 Position (kb) 3109 3110Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3108.763 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.924 kb on - strand, within HP15_2963at 3108.957 kb on - strand, within HP15_2963at 3108.970 kb on + strand, within HP15_2963at 3109.140 kb on + strand, within HP15_2963at 3109.182 kb on - strand, within HP15_2963at 3109.185 kb on + strand, within HP15_2963at 3109.249 kb on + strand, within HP15_2963at 3109.307 kb on - strand, within HP15_2963at 3109.332 kb on + strand, within HP15_2963at 3109.356 kb on + strand, within HP15_2963at 3109.396 kb on - strand, within HP15_2963at 3109.540 kb on - strandat 3109.600 kb on - strandat 3109.637 kb on - strandat 3109.723 kb on + strand, within HP15_2964at 3109.764 kb on - strand, within HP15_2964at 3109.835 kb on + strandat 3109.835 kb on + strandat 3109.840 kb on + strandat 3109.840 kb on + strandat 3109.848 kb on - strandat 3109.848 kb on - strandat 3109.856 kb on + strandat 3109.873 kb on + strandat 3109.905 kb on + strandat 3109.932 kb on - strandat 3109.942 kb on + strand, within HP15_2965at 3109.966 kb on + strand, within HP15_2965at 3109.984 kb on - strand, within HP15_2965at 3109.997 kb on - strand, within HP15_2965at 3110.098 kb on + strand, within HP15_2965at 3110.122 kb on + strand, within HP15_2965at 3110.122 kb on + strand, within HP15_2965at 3110.130 kb on - strand, within HP15_2965at 3110.130 kb on - strand, within HP15_2965at 3110.192 kb on + strand, within HP15_2965at 3110.458 kb on - strand, within HP15_2965at 3110.521 kb on - strand, within HP15_2965at 3110.530 kb on + strand, within HP15_2965at 3110.585 kb on - strand, within HP15_2965at 3110.777 kb on + strand, within HP15_2966

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
3,108,763 - HP15_2963 0.44 +0.2
3,108,924 - HP15_2963 0.54 +0.3
3,108,924 - HP15_2963 0.54 -1.2
3,108,957 - HP15_2963 0.56 +1.5
3,108,970 + HP15_2963 0.57 -1.8
3,109,140 + HP15_2963 0.67 -1.8
3,109,182 - HP15_2963 0.70 -0.5
3,109,185 + HP15_2963 0.70 +1.0
3,109,249 + HP15_2963 0.74 -2.4
3,109,307 - HP15_2963 0.77 -2.3
3,109,332 + HP15_2963 0.79 +0.0
3,109,356 + HP15_2963 0.80 -3.2
3,109,396 - HP15_2963 0.82 +1.0
3,109,540 - -2.8
3,109,600 - +0.4
3,109,637 - +1.0
3,109,723 + HP15_2964 0.38 -0.2
3,109,764 - HP15_2964 0.70 -3.4
3,109,835 + -0.5
3,109,835 + -0.8
3,109,840 + -0.2
3,109,840 + -1.0
3,109,848 - -0.4
3,109,848 - -0.6
3,109,856 + -1.6
3,109,873 + +0.6
3,109,905 + +0.7
3,109,932 - +1.4
3,109,942 + HP15_2965 0.11 -0.7
3,109,966 + HP15_2965 0.14 -1.1
3,109,984 - HP15_2965 0.16 -0.5
3,109,997 - HP15_2965 0.17 +0.2
3,110,098 + HP15_2965 0.30 +0.9
3,110,122 + HP15_2965 0.32 -2.1
3,110,122 + HP15_2965 0.32 -2.1
3,110,130 - HP15_2965 0.33 +1.0
3,110,130 - HP15_2965 0.33 -1.6
3,110,192 + HP15_2965 0.41 -3.8
3,110,458 - HP15_2965 0.72 -0.6
3,110,521 - HP15_2965 0.80 +0.6
3,110,530 + HP15_2965 0.81 +1.2
3,110,585 - HP15_2965 0.88 +1.2
3,110,777 + HP15_2966 0.15 -1.2

Or see this region's nucleotide sequence