Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2963 and HP15_2964 overlap by 11 nucleotides HP15_2964 and HP15_2965 are separated by 47 nucleotides HP15_2965 and HP15_2966 overlap by 4 nucleotides
HP15_2963: HP15_2963 - phosphoglycolate phosphatase, at 3,108,035 to 3,109,684
_2963
HP15_2964: HP15_2964 - hypothetical protein, at 3,109,674 to 3,109,802
_2964
HP15_2965: HP15_2965 - inner membrane protein, at 3,109,850 to 3,110,689
_2965
HP15_2966: HP15_2966 - electron transport protein SCO1/SenC, at 3,110,686 to 3,111,279
_2966
Position (kb)
3109
3110 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3108.763 kb on - strand, within HP15_2963 at 3108.924 kb on - strand, within HP15_2963 at 3108.924 kb on - strand, within HP15_2963 at 3108.957 kb on - strand, within HP15_2963 at 3108.970 kb on + strand, within HP15_2963 at 3109.140 kb on + strand, within HP15_2963 at 3109.182 kb on - strand, within HP15_2963 at 3109.185 kb on + strand, within HP15_2963 at 3109.249 kb on + strand, within HP15_2963 at 3109.307 kb on - strand, within HP15_2963 at 3109.332 kb on + strand, within HP15_2963 at 3109.356 kb on + strand, within HP15_2963 at 3109.396 kb on - strand, within HP15_2963 at 3109.540 kb on - strand at 3109.600 kb on - strand at 3109.637 kb on - strand at 3109.723 kb on + strand, within HP15_2964 at 3109.764 kb on - strand, within HP15_2964 at 3109.835 kb on + strand at 3109.835 kb on + strand at 3109.840 kb on + strand at 3109.840 kb on + strand at 3109.848 kb on - strand at 3109.848 kb on - strand at 3109.856 kb on + strand at 3109.873 kb on + strand at 3109.905 kb on + strand at 3109.932 kb on - strand at 3109.942 kb on + strand, within HP15_2965 at 3109.966 kb on + strand, within HP15_2965 at 3109.984 kb on - strand, within HP15_2965 at 3109.997 kb on - strand, within HP15_2965 at 3110.098 kb on + strand, within HP15_2965 at 3110.122 kb on + strand, within HP15_2965 at 3110.122 kb on + strand, within HP15_2965 at 3110.130 kb on - strand, within HP15_2965 at 3110.130 kb on - strand, within HP15_2965 at 3110.192 kb on + strand, within HP15_2965 at 3110.458 kb on - strand, within HP15_2965 at 3110.521 kb on - strand, within HP15_2965 at 3110.530 kb on + strand, within HP15_2965 at 3110.585 kb on - strand, within HP15_2965 at 3110.777 kb on + strand, within HP15_2966
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,108,763 - HP15_2963 0.44 +0.2 3,108,924 - HP15_2963 0.54 +0.3 3,108,924 - HP15_2963 0.54 -1.2 3,108,957 - HP15_2963 0.56 +1.5 3,108,970 + HP15_2963 0.57 -1.8 3,109,140 + HP15_2963 0.67 -1.8 3,109,182 - HP15_2963 0.70 -0.5 3,109,185 + HP15_2963 0.70 +1.0 3,109,249 + HP15_2963 0.74 -2.4 3,109,307 - HP15_2963 0.77 -2.3 3,109,332 + HP15_2963 0.79 +0.0 3,109,356 + HP15_2963 0.80 -3.2 3,109,396 - HP15_2963 0.82 +1.0 3,109,540 - -2.8 3,109,600 - +0.4 3,109,637 - +1.0 3,109,723 + HP15_2964 0.38 -0.2 3,109,764 - HP15_2964 0.70 -3.4 3,109,835 + -0.5 3,109,835 + -0.8 3,109,840 + -0.2 3,109,840 + -1.0 3,109,848 - -0.4 3,109,848 - -0.6 3,109,856 + -1.6 3,109,873 + +0.6 3,109,905 + +0.7 3,109,932 - +1.4 3,109,942 + HP15_2965 0.11 -0.7 3,109,966 + HP15_2965 0.14 -1.1 3,109,984 - HP15_2965 0.16 -0.5 3,109,997 - HP15_2965 0.17 +0.2 3,110,098 + HP15_2965 0.30 +0.9 3,110,122 + HP15_2965 0.32 -2.1 3,110,122 + HP15_2965 0.32 -2.1 3,110,130 - HP15_2965 0.33 +1.0 3,110,130 - HP15_2965 0.33 -1.6 3,110,192 + HP15_2965 0.41 -3.8 3,110,458 - HP15_2965 0.72 -0.6 3,110,521 - HP15_2965 0.80 +0.6 3,110,530 + HP15_2965 0.81 +1.2 3,110,585 - HP15_2965 0.88 +1.2 3,110,777 + HP15_2966 0.15 -1.2
Or see this region's nucleotide sequence