Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_299 and HP15_300 are separated by 160 nucleotides HP15_300 and HP15_301 are separated by 168 nucleotides
HP15_299: HP15_299 - exodeoxyribonuclease III Xth, at 290,147 to 290,953
_299
HP15_300: HP15_300 - ribonuclease PH, at 291,114 to 291,830
_300
HP15_301: HP15_301 - conserved hypothetical protein, at 291,999 to 292,865
_301
Position (kb) 291
292 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 290.794 kb on + strand, within HP15_299 at 290.980 kb on + strand at 290.988 kb on + strand at 291.018 kb on - strand at 291.033 kb on - strand at 291.128 kb on - strand at 291.152 kb on + strand at 291.160 kb on - strand at 291.194 kb on - strand, within HP15_300 at 291.225 kb on + strand, within HP15_300 at 291.293 kb on + strand, within HP15_300 at 291.303 kb on + strand, within HP15_300 at 291.311 kb on - strand, within HP15_300 at 291.311 kb on - strand, within HP15_300 at 291.654 kb on + strand, within HP15_300 at 291.655 kb on + strand, within HP15_300 at 291.668 kb on - strand, within HP15_300 at 291.746 kb on + strand, within HP15_300 at 291.746 kb on + strand, within HP15_300 at 291.793 kb on + strand at 291.801 kb on - strand at 291.811 kb on - strand at 291.868 kb on + strand at 291.918 kb on - strand at 291.955 kb on - strand at 291.955 kb on - strand at 291.955 kb on - strand at 291.991 kb on + strand at 291.999 kb on - strand at 292.034 kb on + strand at 292.042 kb on - strand at 292.053 kb on + strand at 292.056 kb on - strand at 292.061 kb on - strand at 292.061 kb on - strand at 292.075 kb on - strand at 292.182 kb on + strand, within HP15_301 at 292.213 kb on + strand, within HP15_301 at 292.310 kb on + strand, within HP15_301 at 292.325 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.375 kb on + strand, within HP15_301 at 292.511 kb on + strand, within HP15_301 at 292.532 kb on - strand, within HP15_301 at 292.605 kb on + strand, within HP15_301 at 292.613 kb on - strand, within HP15_301 at 292.613 kb on - strand, within HP15_301 at 292.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 290,794 + HP15_299 0.80 -1.4 290,980 + +1.5 290,988 + +2.5 291,018 - +0.3 291,033 - -1.5 291,128 - -0.2 291,152 + -0.1 291,160 - -1.7 291,194 - HP15_300 0.11 -2.7 291,225 + HP15_300 0.15 -0.8 291,293 + HP15_300 0.25 +0.4 291,303 + HP15_300 0.26 +1.1 291,311 - HP15_300 0.27 -2.8 291,311 - HP15_300 0.27 -3.7 291,654 + HP15_300 0.75 -1.1 291,655 + HP15_300 0.75 -1.7 291,668 - HP15_300 0.77 -0.2 291,746 + HP15_300 0.88 -0.3 291,746 + HP15_300 0.88 -4.0 291,793 + -1.6 291,801 - -0.8 291,811 - -0.5 291,868 + +2.0 291,918 - -0.2 291,955 - -1.0 291,955 - -0.1 291,955 - +0.1 291,991 + +0.5 291,999 - -0.7 292,034 + -0.6 292,042 - +0.2 292,053 + +1.0 292,056 - -0.4 292,061 - +0.2 292,061 - -0.8 292,075 - +1.2 292,182 + HP15_301 0.21 +0.5 292,213 + HP15_301 0.25 -3.2 292,310 + HP15_301 0.36 +0.9 292,325 - HP15_301 0.38 -1.9 292,373 - HP15_301 0.43 -0.2 292,373 - HP15_301 0.43 -0.8 292,373 - HP15_301 0.43 +1.2 292,375 + HP15_301 0.43 -1.5 292,511 + HP15_301 0.59 -1.4 292,532 - HP15_301 0.61 -1.0 292,605 + HP15_301 0.70 +0.4 292,613 - HP15_301 0.71 -2.2 292,613 - HP15_301 0.71 -0.2 292,807 - +0.3
Or see this region's nucleotide sequence