Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2946 and HP15_2947 are separated by 12 nucleotides HP15_2947 and HP15_2948 are separated by 190 nucleotides
HP15_2946: HP15_2946 - acyltransferase, WS/DGAT/MGAT, at 3,088,801 to 3,090,270
_2946
HP15_2947: HP15_2947 - transcriptional regulator, TetR family protein, at 3,090,283 to 3,090,909
_2947
HP15_2948: HP15_2948 - oxidoreductase FAD-binding domain protein, at 3,091,100 to 3,092,209
_2948
Position (kb)
3090
3091 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3089.350 kb on + strand, within HP15_2946 at 3089.382 kb on + strand, within HP15_2946 at 3089.417 kb on + strand, within HP15_2946 at 3089.535 kb on + strand, within HP15_2946 at 3089.535 kb on + strand, within HP15_2946 at 3089.570 kb on + strand, within HP15_2946 at 3089.680 kb on + strand, within HP15_2946 at 3089.691 kb on - strand, within HP15_2946 at 3089.828 kb on + strand, within HP15_2946 at 3089.861 kb on - strand, within HP15_2946 at 3089.874 kb on + strand, within HP15_2946 at 3089.921 kb on + strand, within HP15_2946 at 3089.984 kb on - strand, within HP15_2946 at 3090.113 kb on + strand, within HP15_2946 at 3090.154 kb on + strand at 3090.273 kb on - strand at 3090.413 kb on - strand, within HP15_2947 at 3090.416 kb on + strand, within HP15_2947 at 3090.485 kb on - strand, within HP15_2947 at 3090.500 kb on - strand, within HP15_2947 at 3090.549 kb on - strand, within HP15_2947 at 3090.551 kb on + strand, within HP15_2947 at 3090.564 kb on - strand, within HP15_2947 at 3090.723 kb on + strand, within HP15_2947 at 3090.852 kb on - strand at 3090.885 kb on + strand at 3090.916 kb on - strand at 3090.949 kb on + strand at 3091.008 kb on - strand at 3091.110 kb on - strand at 3091.176 kb on - strand at 3091.245 kb on + strand, within HP15_2948 at 3091.245 kb on + strand, within HP15_2948 at 3091.247 kb on + strand, within HP15_2948 at 3091.250 kb on + strand, within HP15_2948 at 3091.276 kb on + strand, within HP15_2948 at 3091.362 kb on + strand, within HP15_2948 at 3091.400 kb on + strand, within HP15_2948 at 3091.606 kb on + strand, within HP15_2948 at 3091.671 kb on + strand, within HP15_2948 at 3091.852 kb on - strand, within HP15_2948 at 3091.890 kb on - strand, within HP15_2948
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,089,350 + HP15_2946 0.37 -1.3 3,089,382 + HP15_2946 0.40 -0.8 3,089,417 + HP15_2946 0.42 -0.2 3,089,535 + HP15_2946 0.50 -0.0 3,089,535 + HP15_2946 0.50 -0.4 3,089,570 + HP15_2946 0.52 -0.4 3,089,680 + HP15_2946 0.60 -1.2 3,089,691 - HP15_2946 0.61 -1.4 3,089,828 + HP15_2946 0.70 +1.5 3,089,861 - HP15_2946 0.72 -0.8 3,089,874 + HP15_2946 0.73 +0.7 3,089,921 + HP15_2946 0.76 +0.9 3,089,984 - HP15_2946 0.80 -0.6 3,090,113 + HP15_2946 0.89 -0.2 3,090,154 + -1.3 3,090,273 - +2.5 3,090,413 - HP15_2947 0.21 +0.3 3,090,416 + HP15_2947 0.21 -0.7 3,090,485 - HP15_2947 0.32 -0.6 3,090,500 - HP15_2947 0.35 -0.5 3,090,549 - HP15_2947 0.42 -1.7 3,090,551 + HP15_2947 0.43 +0.2 3,090,564 - HP15_2947 0.45 -0.6 3,090,723 + HP15_2947 0.70 -1.7 3,090,852 - +0.1 3,090,885 + +0.7 3,090,916 - +0.2 3,090,949 + -0.5 3,091,008 - -1.8 3,091,110 - -3.3 3,091,176 - -0.6 3,091,245 + HP15_2948 0.13 +0.0 3,091,245 + HP15_2948 0.13 +0.2 3,091,247 + HP15_2948 0.13 +0.3 3,091,250 + HP15_2948 0.14 -0.4 3,091,276 + HP15_2948 0.16 +0.1 3,091,362 + HP15_2948 0.24 +0.5 3,091,400 + HP15_2948 0.27 +0.8 3,091,606 + HP15_2948 0.46 -0.4 3,091,671 + HP15_2948 0.51 +1.1 3,091,852 - HP15_2948 0.68 -0.6 3,091,890 - HP15_2948 0.71 +0.2
Or see this region's nucleotide sequence