Strain Fitness in Marinobacter adhaerens HP15 around HP15_2868

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2867 and HP15_2868 are separated by 71 nucleotidesHP15_2868 and HP15_2869 are separated by 192 nucleotidesHP15_2869 and HP15_2870 are separated by 43 nucleotides HP15_2867: HP15_2867 - HypX, at 3,004,901 to 3,006,841 _2867 HP15_2868: HP15_2868 - hypothetical protein, at 3,006,913 to 3,007,047 _2868 HP15_2869: HP15_2869 - HupE/UreJ protein, at 3,007,240 to 3,007,815 _2869 HP15_2870: HP15_2870 - urease accessory protein ureG-like protein, at 3,007,859 to 3,008,473 _2870 Position (kb) 3006 3007 3008Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3006.035 kb on + strand, within HP15_2867at 3006.439 kb on + strand, within HP15_2867at 3006.528 kb on + strand, within HP15_2867at 3006.544 kb on + strand, within HP15_2867at 3006.656 kb on - strandat 3006.671 kb on - strandat 3006.689 kb on - strandat 3006.753 kb on + strandat 3006.753 kb on + strandat 3006.761 kb on - strandat 3006.847 kb on + strandat 3006.847 kb on + strandat 3006.855 kb on - strandat 3006.946 kb on - strand, within HP15_2868at 3006.982 kb on + strand, within HP15_2868at 3007.005 kb on - strand, within HP15_2868at 3007.034 kb on + strandat 3007.085 kb on + strandat 3007.099 kb on - strandat 3007.157 kb on + strandat 3007.367 kb on + strand, within HP15_2869at 3007.383 kb on + strand, within HP15_2869at 3007.425 kb on + strand, within HP15_2869at 3007.433 kb on + strand, within HP15_2869at 3007.468 kb on + strand, within HP15_2869at 3007.550 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.565 kb on - strand, within HP15_2869at 3007.627 kb on + strand, within HP15_2869at 3007.652 kb on + strand, within HP15_2869at 3007.750 kb on + strand, within HP15_2869at 3007.772 kb on + strandat 3007.787 kb on - strandat 3007.797 kb on - strandat 3007.797 kb on - strandat 3007.866 kb on + strandat 3007.909 kb on + strandat 3007.920 kb on + strandat 3007.939 kb on + strand, within HP15_2870at 3007.973 kb on + strand, within HP15_2870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
3,006,035 + HP15_2867 0.58 -4.3
3,006,439 + HP15_2867 0.79 +0.7
3,006,528 + HP15_2867 0.84 +0.3
3,006,544 + HP15_2867 0.85 +0.2
3,006,656 - -0.4
3,006,671 - +0.3
3,006,689 - -2.2
3,006,753 + -1.3
3,006,753 + +0.3
3,006,761 - +0.5
3,006,847 + +1.5
3,006,847 + +0.6
3,006,855 - -3.0
3,006,946 - HP15_2868 0.24 -4.3
3,006,982 + HP15_2868 0.51 +1.0
3,007,005 - HP15_2868 0.68 -2.1
3,007,034 + +1.1
3,007,085 + +0.3
3,007,099 - -2.2
3,007,157 + +0.4
3,007,367 + HP15_2869 0.22 +0.3
3,007,383 + HP15_2869 0.25 -1.2
3,007,425 + HP15_2869 0.32 -0.9
3,007,433 + HP15_2869 0.34 +0.2
3,007,468 + HP15_2869 0.40 +0.4
3,007,550 - HP15_2869 0.54 +0.1
3,007,565 - HP15_2869 0.56 +0.2
3,007,565 - HP15_2869 0.56 +0.2
3,007,565 - HP15_2869 0.56 -0.7
3,007,627 + HP15_2869 0.67 +1.1
3,007,652 + HP15_2869 0.72 -0.4
3,007,750 + HP15_2869 0.89 -2.7
3,007,772 + -2.9
3,007,787 - -0.1
3,007,797 - +3.6
3,007,797 - +0.2
3,007,866 + -1.3
3,007,909 + +1.7
3,007,920 + +0.6
3,007,939 + HP15_2870 0.13 -0.4
3,007,973 + HP15_2870 0.19 +0.0

Or see this region's nucleotide sequence