Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2796 and HP15_2797 are separated by 90 nucleotides HP15_2797 and HP15_2798 are separated by 66 nucleotides HP15_2798 and HP15_2799 are separated by 9 nucleotides HP15_2799 and HP15_2800 are separated by 183 nucleotides
HP15_2796: HP15_2796 - serine protease, at 2,944,299 to 2,945,192
_2796
HP15_2797: HP15_2797 - glutathione S-transferase family protein, at 2,945,283 to 2,945,951
_2797
HP15_2798: HP15_2798 - protein containing cupin 2, conserved barrel domain, at 2,946,018 to 2,946,395
_2798
HP15_2799: HP15_2799 - hydrolase, alpha/beta fold family, at 2,946,405 to 2,947,193
_2799
HP15_2800: HP15_2800 - glucose-methanol-choline oxidoreductase, at 2,947,377 to 2,948,990
_2800
Position (kb)
2946
2947 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2945.099 kb on + strand, within HP15_2796 at 2945.133 kb on - strand at 2945.160 kb on + strand at 2945.204 kb on - strand at 2945.242 kb on + strand at 2945.250 kb on - strand at 2945.306 kb on - strand at 2945.552 kb on - strand, within HP15_2797 at 2945.552 kb on - strand, within HP15_2797 at 2945.597 kb on + strand, within HP15_2797 at 2945.633 kb on + strand, within HP15_2797 at 2945.675 kb on - strand, within HP15_2797 at 2945.738 kb on - strand, within HP15_2797 at 2945.842 kb on - strand, within HP15_2797 at 2945.875 kb on - strand, within HP15_2797 at 2945.904 kb on + strand at 2945.912 kb on - strand at 2945.928 kb on + strand at 2945.972 kb on + strand at 2946.176 kb on - strand, within HP15_2798 at 2946.285 kb on + strand, within HP15_2798 at 2946.310 kb on - strand, within HP15_2798 at 2946.332 kb on - strand, within HP15_2798 at 2946.411 kb on - strand at 2946.411 kb on - strand at 2946.461 kb on + strand at 2946.520 kb on + strand, within HP15_2799 at 2946.520 kb on + strand, within HP15_2799 at 2946.528 kb on - strand, within HP15_2799 at 2946.705 kb on - strand, within HP15_2799 at 2946.744 kb on - strand, within HP15_2799 at 2946.746 kb on + strand, within HP15_2799 at 2946.756 kb on - strand, within HP15_2799 at 2946.870 kb on + strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.878 kb on - strand, within HP15_2799 at 2946.898 kb on - strand, within HP15_2799 at 2947.031 kb on + strand, within HP15_2799 at 2947.037 kb on + strand at 2947.127 kb on - strand at 2947.127 kb on - strand at 2947.161 kb on - strand at 2947.225 kb on + strand at 2947.239 kb on + strand at 2947.284 kb on - strand at 2947.294 kb on - strand at 2947.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,945,099 + HP15_2796 0.89 -1.2 2,945,133 - +0.6 2,945,160 + -0.4 2,945,204 - -1.5 2,945,242 + +1.2 2,945,250 - -0.3 2,945,306 - +1.7 2,945,552 - HP15_2797 0.40 -1.5 2,945,552 - HP15_2797 0.40 +1.7 2,945,597 + HP15_2797 0.47 -0.2 2,945,633 + HP15_2797 0.52 +1.3 2,945,675 - HP15_2797 0.59 +0.9 2,945,738 - HP15_2797 0.68 +0.6 2,945,842 - HP15_2797 0.84 -1.7 2,945,875 - HP15_2797 0.88 -3.2 2,945,904 + -0.8 2,945,912 - +1.3 2,945,928 + +3.7 2,945,972 + -0.1 2,946,176 - HP15_2798 0.42 -1.1 2,946,285 + HP15_2798 0.71 +3.0 2,946,310 - HP15_2798 0.77 -1.4 2,946,332 - HP15_2798 0.83 -0.6 2,946,411 - +0.6 2,946,411 - +0.6 2,946,461 + -0.1 2,946,520 + HP15_2799 0.15 +0.3 2,946,520 + HP15_2799 0.15 +2.3 2,946,528 - HP15_2799 0.16 +0.2 2,946,705 - HP15_2799 0.38 -1.2 2,946,744 - HP15_2799 0.43 -0.2 2,946,746 + HP15_2799 0.43 -1.1 2,946,756 - HP15_2799 0.44 +0.3 2,946,870 + HP15_2799 0.59 +1.7 2,946,878 - HP15_2799 0.60 -0.5 2,946,878 - HP15_2799 0.60 +0.8 2,946,878 - HP15_2799 0.60 +0.3 2,946,898 - HP15_2799 0.62 +0.6 2,947,031 + HP15_2799 0.79 +0.1 2,947,037 + +0.1 2,947,127 - -0.6 2,947,127 - -0.5 2,947,161 - +1.5 2,947,225 + +2.2 2,947,239 + -1.3 2,947,284 - +1.2 2,947,294 - -1.0 2,947,301 - +1.4
Or see this region's nucleotide sequence