Strain Fitness in Marinobacter adhaerens HP15 around HP15_2798

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2796 and HP15_2797 are separated by 90 nucleotidesHP15_2797 and HP15_2798 are separated by 66 nucleotidesHP15_2798 and HP15_2799 are separated by 9 nucleotidesHP15_2799 and HP15_2800 are separated by 183 nucleotides HP15_2796: HP15_2796 - serine protease, at 2,944,299 to 2,945,192 _2796 HP15_2797: HP15_2797 - glutathione S-transferase family protein, at 2,945,283 to 2,945,951 _2797 HP15_2798: HP15_2798 - protein containing cupin 2, conserved barrel domain, at 2,946,018 to 2,946,395 _2798 HP15_2799: HP15_2799 - hydrolase, alpha/beta fold family, at 2,946,405 to 2,947,193 _2799 HP15_2800: HP15_2800 - glucose-methanol-choline oxidoreductase, at 2,947,377 to 2,948,990 _2800 Position (kb) 2946 2947Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2945.099 kb on + strand, within HP15_2796at 2945.133 kb on - strandat 2945.160 kb on + strandat 2945.204 kb on - strandat 2945.242 kb on + strandat 2945.250 kb on - strandat 2945.306 kb on - strandat 2945.552 kb on - strand, within HP15_2797at 2945.552 kb on - strand, within HP15_2797at 2945.597 kb on + strand, within HP15_2797at 2945.633 kb on + strand, within HP15_2797at 2945.675 kb on - strand, within HP15_2797at 2945.738 kb on - strand, within HP15_2797at 2945.842 kb on - strand, within HP15_2797at 2945.875 kb on - strand, within HP15_2797at 2945.904 kb on + strandat 2945.912 kb on - strandat 2945.928 kb on + strandat 2945.972 kb on + strandat 2946.176 kb on - strand, within HP15_2798at 2946.285 kb on + strand, within HP15_2798at 2946.310 kb on - strand, within HP15_2798at 2946.332 kb on - strand, within HP15_2798at 2946.411 kb on - strandat 2946.411 kb on - strandat 2946.461 kb on + strandat 2946.520 kb on + strand, within HP15_2799at 2946.520 kb on + strand, within HP15_2799at 2946.528 kb on - strand, within HP15_2799at 2946.705 kb on - strand, within HP15_2799at 2946.744 kb on - strand, within HP15_2799at 2946.746 kb on + strand, within HP15_2799at 2946.756 kb on - strand, within HP15_2799at 2946.870 kb on + strand, within HP15_2799at 2946.878 kb on - strand, within HP15_2799at 2946.878 kb on - strand, within HP15_2799at 2946.878 kb on - strand, within HP15_2799at 2946.898 kb on - strand, within HP15_2799at 2947.031 kb on + strand, within HP15_2799at 2947.037 kb on + strandat 2947.127 kb on - strandat 2947.127 kb on - strandat 2947.161 kb on - strandat 2947.225 kb on + strandat 2947.239 kb on + strandat 2947.284 kb on - strandat 2947.294 kb on - strandat 2947.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,945,099 + HP15_2796 0.89 -1.2
2,945,133 - +0.6
2,945,160 + -0.4
2,945,204 - -1.5
2,945,242 + +1.2
2,945,250 - -0.3
2,945,306 - +1.7
2,945,552 - HP15_2797 0.40 -1.5
2,945,552 - HP15_2797 0.40 +1.7
2,945,597 + HP15_2797 0.47 -0.2
2,945,633 + HP15_2797 0.52 +1.3
2,945,675 - HP15_2797 0.59 +0.9
2,945,738 - HP15_2797 0.68 +0.6
2,945,842 - HP15_2797 0.84 -1.7
2,945,875 - HP15_2797 0.88 -3.2
2,945,904 + -0.8
2,945,912 - +1.3
2,945,928 + +3.7
2,945,972 + -0.1
2,946,176 - HP15_2798 0.42 -1.1
2,946,285 + HP15_2798 0.71 +3.0
2,946,310 - HP15_2798 0.77 -1.4
2,946,332 - HP15_2798 0.83 -0.6
2,946,411 - +0.6
2,946,411 - +0.6
2,946,461 + -0.1
2,946,520 + HP15_2799 0.15 +0.3
2,946,520 + HP15_2799 0.15 +2.3
2,946,528 - HP15_2799 0.16 +0.2
2,946,705 - HP15_2799 0.38 -1.2
2,946,744 - HP15_2799 0.43 -0.2
2,946,746 + HP15_2799 0.43 -1.1
2,946,756 - HP15_2799 0.44 +0.3
2,946,870 + HP15_2799 0.59 +1.7
2,946,878 - HP15_2799 0.60 -0.5
2,946,878 - HP15_2799 0.60 +0.8
2,946,878 - HP15_2799 0.60 +0.3
2,946,898 - HP15_2799 0.62 +0.6
2,947,031 + HP15_2799 0.79 +0.1
2,947,037 + +0.1
2,947,127 - -0.6
2,947,127 - -0.5
2,947,161 - +1.5
2,947,225 + +2.2
2,947,239 + -1.3
2,947,284 - +1.2
2,947,294 - -1.0
2,947,301 - +1.4

Or see this region's nucleotide sequence