Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2643 and HP15_2644 are separated by 17 nucleotides HP15_2644 and HP15_2645 are separated by 96 nucleotides HP15_2645 and HP15_2646 are separated by 85 nucleotides
HP15_2643: HP15_2643 - conserved hypothetical protein, at 2,792,779 to 2,793,444
_2643
HP15_2644: HP15_2644 - permease, at 2,793,462 to 2,794,238
_2644
HP15_2645: HP15_2645 - methyl-accepting chemotaxis protein, at 2,794,335 to 2,796,212
_2645
HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359
_2646
Position (kb)
2794
2795
2796
2797 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2793.511 kb on + strand at 2793.615 kb on - strand, within HP15_2644 at 2793.671 kb on + strand, within HP15_2644 at 2793.679 kb on + strand, within HP15_2644 at 2793.734 kb on - strand, within HP15_2644 at 2793.734 kb on - strand, within HP15_2644 at 2793.747 kb on + strand, within HP15_2644 at 2793.802 kb on - strand, within HP15_2644 at 2793.870 kb on - strand, within HP15_2644 at 2794.049 kb on - strand, within HP15_2644 at 2794.181 kb on - strand at 2794.350 kb on + strand at 2794.389 kb on + strand at 2794.442 kb on - strand at 2794.485 kb on + strand at 2794.493 kb on - strand at 2794.613 kb on + strand, within HP15_2645 at 2794.677 kb on + strand, within HP15_2645 at 2794.702 kb on + strand, within HP15_2645 at 2794.734 kb on - strand, within HP15_2645 at 2794.776 kb on - strand, within HP15_2645 at 2794.959 kb on + strand, within HP15_2645 at 2795.129 kb on + strand, within HP15_2645 at 2795.185 kb on + strand, within HP15_2645 at 2795.250 kb on - strand, within HP15_2645 at 2795.250 kb on - strand, within HP15_2645 at 2795.287 kb on + strand, within HP15_2645 at 2795.484 kb on - strand, within HP15_2645 at 2795.535 kb on - strand, within HP15_2645 at 2795.562 kb on + strand, within HP15_2645 at 2795.570 kb on - strand, within HP15_2645 at 2795.644 kb on - strand, within HP15_2645 at 2795.726 kb on - strand, within HP15_2645 at 2795.928 kb on + strand, within HP15_2645 at 2795.943 kb on + strand, within HP15_2645 at 2796.053 kb on - strand at 2796.182 kb on + strand at 2796.186 kb on - strand at 2796.207 kb on + strand at 2796.219 kb on + strand at 2796.227 kb on - strand at 2796.243 kb on + strand at 2796.316 kb on + strand at 2796.345 kb on + strand at 2796.385 kb on - strand at 2796.489 kb on - strand, within HP15_2646 at 2796.545 kb on + strand, within HP15_2646 at 2796.645 kb on - strand, within HP15_2646 at 2796.649 kb on + strand, within HP15_2646 at 2796.806 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.840 kb on + strand, within HP15_2646 at 2796.848 kb on - strand, within HP15_2646 at 2796.876 kb on - strand, within HP15_2646 at 2796.927 kb on + strand, within HP15_2646 at 2796.945 kb on + strand, within HP15_2646 at 2797.139 kb on + strand, within HP15_2646 at 2797.147 kb on - strand, within HP15_2646 at 2797.187 kb on + strand, within HP15_2646
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,793,511 + -0.6 2,793,615 - HP15_2644 0.20 -0.4 2,793,671 + HP15_2644 0.27 -0.9 2,793,679 + HP15_2644 0.28 +0.2 2,793,734 - HP15_2644 0.35 -1.1 2,793,734 - HP15_2644 0.35 +0.5 2,793,747 + HP15_2644 0.37 +0.2 2,793,802 - HP15_2644 0.44 -0.4 2,793,870 - HP15_2644 0.53 -0.6 2,794,049 - HP15_2644 0.76 -3.1 2,794,181 - -0.3 2,794,350 + -1.4 2,794,389 + +0.6 2,794,442 - +1.2 2,794,485 + +0.4 2,794,493 - -1.3 2,794,613 + HP15_2645 0.15 +0.2 2,794,677 + HP15_2645 0.18 -0.8 2,794,702 + HP15_2645 0.20 +0.4 2,794,734 - HP15_2645 0.21 -0.8 2,794,776 - HP15_2645 0.23 -2.4 2,794,959 + HP15_2645 0.33 -0.6 2,795,129 + HP15_2645 0.42 +2.5 2,795,185 + HP15_2645 0.45 -1.4 2,795,250 - HP15_2645 0.49 -3.6 2,795,250 - HP15_2645 0.49 -0.2 2,795,287 + HP15_2645 0.51 +0.2 2,795,484 - HP15_2645 0.61 -0.8 2,795,535 - HP15_2645 0.64 -2.4 2,795,562 + HP15_2645 0.65 -0.3 2,795,570 - HP15_2645 0.66 -3.2 2,795,644 - HP15_2645 0.70 -0.6 2,795,726 - HP15_2645 0.74 +2.2 2,795,928 + HP15_2645 0.85 -4.6 2,795,943 + HP15_2645 0.86 -1.1 2,796,053 - +0.5 2,796,182 + +0.0 2,796,186 - -3.8 2,796,207 + -0.2 2,796,219 + +1.1 2,796,227 - -0.3 2,796,243 + -0.9 2,796,316 + +1.1 2,796,345 + +0.3 2,796,385 - -0.2 2,796,489 - HP15_2646 0.18 +0.3 2,796,545 + HP15_2646 0.23 -0.3 2,796,645 - HP15_2646 0.33 -0.7 2,796,649 + HP15_2646 0.33 -0.4 2,796,806 + HP15_2646 0.48 -0.9 2,796,840 + HP15_2646 0.51 -0.9 2,796,840 + HP15_2646 0.51 +0.1 2,796,848 - HP15_2646 0.52 +0.1 2,796,876 - HP15_2646 0.54 -0.8 2,796,927 + HP15_2646 0.59 -1.9 2,796,945 + HP15_2646 0.61 +0.9 2,797,139 + HP15_2646 0.79 +1.3 2,797,147 - HP15_2646 0.80 -1.4 2,797,187 + HP15_2646 0.84 +2.1
Or see this region's nucleotide sequence