Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2583 and HP15_2584 overlap by 1 nucleotides HP15_2584 and HP15_2585 overlap by 4 nucleotides HP15_2585 and HP15_2586 are separated by 41 nucleotides HP15_2586 and HP15_2587 are separated by 115 nucleotides
HP15_2583: HP15_2583 - monovalent cation/H+ antiporter subunit D, at 2,733,865 to 2,735,382
_2583
HP15_2584: HP15_2584 - pH adaption potassium efflux system protein PhaE, at 2,735,382 to 2,735,870
_2584
HP15_2585: HP15_2585 - multiple resistance and pH regulation protein F, at 2,735,867 to 2,736,136
_2585
HP15_2586: HP15_2586 - monovalent cation/H+ antiporter subunit G, at 2,736,178 to 2,736,510
_2586
HP15_2587: HP15_2587 - monovalent cation/H+ antiporter subunit A, at 2,736,626 to 2,738,935
_2587
Position (kb)
2736
2737 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2735.209 kb on - strand, within HP15_2583 at 2735.319 kb on - strand at 2735.333 kb on - strand at 2735.364 kb on + strand at 2735.404 kb on + strand at 2735.419 kb on + strand at 2735.478 kb on + strand, within HP15_2584 at 2735.564 kb on - strand, within HP15_2584 at 2735.619 kb on - strand, within HP15_2584 at 2735.676 kb on - strand, within HP15_2584 at 2735.915 kb on - strand, within HP15_2585 at 2735.984 kb on + strand, within HP15_2585 at 2735.992 kb on - strand, within HP15_2585 at 2736.011 kb on + strand, within HP15_2585 at 2736.121 kb on - strand at 2736.131 kb on - strand at 2736.319 kb on - strand, within HP15_2586 at 2736.321 kb on - strand, within HP15_2586 at 2736.331 kb on + strand, within HP15_2586 at 2736.367 kb on - strand, within HP15_2586 at 2736.474 kb on - strand, within HP15_2586 at 2736.713 kb on + strand at 2736.713 kb on + strand at 2736.788 kb on + strand at 2736.857 kb on - strand, within HP15_2587 at 2736.862 kb on - strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2737.122 kb on - strand, within HP15_2587 at 2737.183 kb on - strand, within HP15_2587 at 2737.272 kb on - strand, within HP15_2587 at 2737.369 kb on + strand, within HP15_2587 at 2737.377 kb on - strand, within HP15_2587
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,735,209 - HP15_2583 0.89 -2.4 2,735,319 - -2.8 2,735,333 - +0.1 2,735,364 + -0.9 2,735,404 + +1.4 2,735,419 + -1.8 2,735,478 + HP15_2584 0.20 -1.0 2,735,564 - HP15_2584 0.37 +1.3 2,735,619 - HP15_2584 0.48 +0.1 2,735,676 - HP15_2584 0.60 -1.8 2,735,915 - HP15_2585 0.18 -2.4 2,735,984 + HP15_2585 0.43 -2.6 2,735,992 - HP15_2585 0.46 +0.2 2,736,011 + HP15_2585 0.53 +1.5 2,736,121 - -1.4 2,736,131 - +0.2 2,736,319 - HP15_2586 0.42 -0.8 2,736,321 - HP15_2586 0.43 -0.3 2,736,331 + HP15_2586 0.46 -2.2 2,736,367 - HP15_2586 0.57 +0.2 2,736,474 - HP15_2586 0.89 -1.2 2,736,713 + -0.7 2,736,713 + +2.4 2,736,788 + +0.5 2,736,857 - HP15_2587 0.10 +3.7 2,736,862 - HP15_2587 0.10 +0.8 2,736,891 + HP15_2587 0.11 -0.2 2,736,891 + HP15_2587 0.11 +1.0 2,737,122 - HP15_2587 0.21 +0.6 2,737,183 - HP15_2587 0.24 +0.6 2,737,272 - HP15_2587 0.28 -0.9 2,737,369 + HP15_2587 0.32 -0.6 2,737,377 - HP15_2587 0.33 +0.7
Or see this region's nucleotide sequence