Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2575 and HP15_2576 overlap by 10 nucleotides HP15_2576 and HP15_2577 are separated by 114 nucleotides
HP15_2575: HP15_2575 - enoyl-CoA hydratase/isomerase family protein carnitinyl-CoA, at 2,723,290 to 2,724,078
_2575
HP15_2576: HP15_2576 - acyl-CoA dehydrogenase domain protein, at 2,724,069 to 2,725,871
_2576
HP15_2577: HP15_2577 - protein containing helix-turn-helix, AraC domain, at 2,725,986 to 2,726,981
_2577
Position (kb)
2724
2725
2726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2723.158 kb on - strand at 2723.191 kb on + strand at 2723.298 kb on - strand at 2723.367 kb on - strand at 2723.367 kb on - strand at 2723.386 kb on - strand, within HP15_2575 at 2723.404 kb on + strand, within HP15_2575 at 2723.412 kb on - strand, within HP15_2575 at 2723.446 kb on + strand, within HP15_2575 at 2723.454 kb on - strand, within HP15_2575 at 2723.541 kb on + strand, within HP15_2575 at 2723.712 kb on + strand, within HP15_2575 at 2723.720 kb on - strand, within HP15_2575 at 2723.720 kb on - strand, within HP15_2575 at 2723.727 kb on - strand, within HP15_2575 at 2723.738 kb on - strand, within HP15_2575 at 2723.768 kb on - strand, within HP15_2575 at 2723.840 kb on - strand, within HP15_2575 at 2723.869 kb on + strand, within HP15_2575 at 2723.872 kb on - strand, within HP15_2575 at 2723.909 kb on + strand, within HP15_2575 at 2723.917 kb on - strand, within HP15_2575 at 2723.917 kb on - strand, within HP15_2575 at 2723.997 kb on - strand, within HP15_2575 at 2724.165 kb on + strand at 2724.238 kb on - strand at 2724.257 kb on - strand, within HP15_2576 at 2724.264 kb on + strand, within HP15_2576 at 2724.272 kb on - strand, within HP15_2576 at 2724.274 kb on + strand, within HP15_2576 at 2724.282 kb on - strand, within HP15_2576 at 2724.315 kb on + strand, within HP15_2576 at 2724.315 kb on + strand, within HP15_2576 at 2724.526 kb on - strand, within HP15_2576 at 2724.582 kb on - strand, within HP15_2576 at 2724.638 kb on + strand, within HP15_2576 at 2724.668 kb on + strand, within HP15_2576 at 2724.704 kb on + strand, within HP15_2576 at 2724.732 kb on + strand, within HP15_2576 at 2724.896 kb on + strand, within HP15_2576 at 2724.902 kb on - strand, within HP15_2576 at 2724.925 kb on - strand, within HP15_2576 at 2724.948 kb on + strand, within HP15_2576 at 2725.060 kb on - strand, within HP15_2576 at 2725.078 kb on + strand, within HP15_2576 at 2725.142 kb on - strand, within HP15_2576 at 2725.238 kb on - strand, within HP15_2576 at 2725.297 kb on + strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.305 kb on - strand, within HP15_2576 at 2725.366 kb on + strand, within HP15_2576 at 2725.382 kb on + strand, within HP15_2576 at 2725.418 kb on - strand, within HP15_2576 at 2725.512 kb on - strand, within HP15_2576 at 2725.520 kb on - strand, within HP15_2576 at 2725.577 kb on + strand, within HP15_2576 at 2725.633 kb on + strand, within HP15_2576 at 2725.708 kb on - strand at 2725.709 kb on - strand at 2725.874 kb on - strand at 2726.027 kb on - strand at 2726.032 kb on - strand at 2726.419 kb on + strand, within HP15_2577 at 2726.512 kb on + strand, within HP15_2577 at 2726.529 kb on - strand, within HP15_2577 at 2726.534 kb on - strand, within HP15_2577 at 2726.679 kb on + strand, within HP15_2577 at 2726.738 kb on + strand, within HP15_2577 at 2726.799 kb on + strand, within HP15_2577
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,723,158 - -2.1 2,723,191 + -0.8 2,723,298 - -1.3 2,723,367 - -1.4 2,723,367 - +0.2 2,723,386 - HP15_2575 0.12 +0.9 2,723,404 + HP15_2575 0.14 -0.3 2,723,412 - HP15_2575 0.15 +2.1 2,723,446 + HP15_2575 0.20 -0.1 2,723,454 - HP15_2575 0.21 +1.5 2,723,541 + HP15_2575 0.32 -0.3 2,723,712 + HP15_2575 0.53 -0.5 2,723,720 - HP15_2575 0.54 -1.8 2,723,720 - HP15_2575 0.54 -0.5 2,723,727 - HP15_2575 0.55 -0.3 2,723,738 - HP15_2575 0.57 +0.1 2,723,768 - HP15_2575 0.61 -2.8 2,723,840 - HP15_2575 0.70 +0.9 2,723,869 + HP15_2575 0.73 +0.2 2,723,872 - HP15_2575 0.74 -0.9 2,723,909 + HP15_2575 0.78 +1.7 2,723,917 - HP15_2575 0.79 -0.6 2,723,917 - HP15_2575 0.79 -0.4 2,723,997 - HP15_2575 0.90 +0.4 2,724,165 + -1.6 2,724,238 - +1.4 2,724,257 - HP15_2576 0.10 -0.3 2,724,264 + HP15_2576 0.11 +0.0 2,724,272 - HP15_2576 0.11 +0.2 2,724,274 + HP15_2576 0.11 -0.1 2,724,282 - HP15_2576 0.12 +0.4 2,724,315 + HP15_2576 0.14 +0.1 2,724,315 + HP15_2576 0.14 -2.6 2,724,526 - HP15_2576 0.25 +0.8 2,724,582 - HP15_2576 0.28 +0.8 2,724,638 + HP15_2576 0.32 -3.2 2,724,668 + HP15_2576 0.33 -0.3 2,724,704 + HP15_2576 0.35 +0.5 2,724,732 + HP15_2576 0.37 -0.0 2,724,896 + HP15_2576 0.46 -0.6 2,724,902 - HP15_2576 0.46 +0.5 2,724,925 - HP15_2576 0.47 +1.2 2,724,948 + HP15_2576 0.49 +1.2 2,725,060 - HP15_2576 0.55 -3.0 2,725,078 + HP15_2576 0.56 -0.9 2,725,142 - HP15_2576 0.60 +3.9 2,725,238 - HP15_2576 0.65 -0.8 2,725,297 + HP15_2576 0.68 -0.7 2,725,305 - HP15_2576 0.69 -2.1 2,725,305 - HP15_2576 0.69 -0.5 2,725,366 + HP15_2576 0.72 -0.0 2,725,382 + HP15_2576 0.73 -0.0 2,725,418 - HP15_2576 0.75 -0.4 2,725,512 - HP15_2576 0.80 -0.1 2,725,520 - HP15_2576 0.80 +1.0 2,725,577 + HP15_2576 0.84 +2.2 2,725,633 + HP15_2576 0.87 +0.4 2,725,708 - +0.1 2,725,709 - -1.2 2,725,874 - -0.5 2,726,027 - +0.1 2,726,032 - +0.5 2,726,419 + HP15_2577 0.43 +1.0 2,726,512 + HP15_2577 0.53 -2.2 2,726,529 - HP15_2577 0.55 +0.5 2,726,534 - HP15_2577 0.55 -0.2 2,726,679 + HP15_2577 0.70 +1.5 2,726,738 + HP15_2577 0.76 -0.2 2,726,799 + HP15_2577 0.82 +2.0
Or see this region's nucleotide sequence