Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2567 and HP15_2568 are separated by 83 nucleotides HP15_2568 and HP15_2569 are separated by 13 nucleotides HP15_2569 and HP15_2570 are separated by 146 nucleotides
HP15_2567: HP15_2567 - uncharacterized conserved protein UCP028101, at 2,713,978 to 2,715,072
_2567
HP15_2568: HP15_2568 - permease of the major facilitator superfamily protein, at 2,715,156 to 2,716,469
_2568
HP15_2569: HP15_2569 - conserved hypothetical protein, membrane, at 2,716,483 to 2,716,770
_2569
HP15_2570: HP15_2570 - methyl-accepting chemotaxis sensory transducer, at 2,716,917 to 2,718,521
_2570
Position (kb)
2715
2716
2717 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2714.186 kb on + strand, within HP15_2567 at 2714.194 kb on - strand, within HP15_2567 at 2714.246 kb on - strand, within HP15_2567 at 2714.271 kb on + strand, within HP15_2567 at 2714.271 kb on + strand, within HP15_2567 at 2714.271 kb on + strand, within HP15_2567 at 2714.271 kb on + strand, within HP15_2567 at 2714.279 kb on - strand, within HP15_2567 at 2714.279 kb on - strand, within HP15_2567 at 2714.345 kb on - strand, within HP15_2567 at 2714.476 kb on - strand, within HP15_2567 at 2714.581 kb on + strand, within HP15_2567 at 2714.787 kb on + strand, within HP15_2567 at 2714.795 kb on - strand, within HP15_2567 at 2714.795 kb on - strand, within HP15_2567 at 2714.996 kb on - strand at 2715.031 kb on + strand at 2715.154 kb on - strand at 2715.292 kb on + strand, within HP15_2568 at 2715.318 kb on + strand, within HP15_2568 at 2715.377 kb on - strand, within HP15_2568 at 2715.396 kb on - strand, within HP15_2568 at 2715.452 kb on + strand, within HP15_2568 at 2715.531 kb on + strand, within HP15_2568 at 2715.656 kb on - strand, within HP15_2568 at 2715.746 kb on + strand, within HP15_2568 at 2715.758 kb on + strand, within HP15_2568 at 2715.758 kb on + strand, within HP15_2568 at 2715.825 kb on + strand, within HP15_2568 at 2715.833 kb on - strand, within HP15_2568 at 2715.896 kb on + strand, within HP15_2568 at 2715.952 kb on + strand, within HP15_2568 at 2715.957 kb on + strand, within HP15_2568 at 2715.957 kb on + strand, within HP15_2568 at 2716.017 kb on - strand, within HP15_2568 at 2716.041 kb on + strand, within HP15_2568 at 2716.049 kb on - strand, within HP15_2568 at 2716.090 kb on + strand, within HP15_2568 at 2716.127 kb on + strand, within HP15_2568 at 2716.156 kb on - strand, within HP15_2568 at 2716.179 kb on + strand, within HP15_2568 at 2716.246 kb on + strand, within HP15_2568 at 2716.438 kb on - strand at 2716.463 kb on + strand at 2716.623 kb on - strand, within HP15_2569 at 2716.623 kb on - strand, within HP15_2569 at 2716.633 kb on - strand, within HP15_2569 at 2716.723 kb on + strand, within HP15_2569 at 2716.749 kb on - strand at 2716.768 kb on - strand at 2716.879 kb on + strand at 2717.103 kb on - strand, within HP15_2570 at 2717.395 kb on - strand, within HP15_2570 at 2717.398 kb on + strand, within HP15_2570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,714,186 + HP15_2567 0.19 -2.8 2,714,194 - HP15_2567 0.20 -1.1 2,714,246 - HP15_2567 0.24 +0.8 2,714,271 + HP15_2567 0.27 -0.8 2,714,271 + HP15_2567 0.27 +0.5 2,714,271 + HP15_2567 0.27 +0.6 2,714,271 + HP15_2567 0.27 +1.0 2,714,279 - HP15_2567 0.27 +0.9 2,714,279 - HP15_2567 0.27 -0.0 2,714,345 - HP15_2567 0.34 -0.6 2,714,476 - HP15_2567 0.45 -0.4 2,714,581 + HP15_2567 0.55 -0.7 2,714,787 + HP15_2567 0.74 -2.0 2,714,795 - HP15_2567 0.75 +0.4 2,714,795 - HP15_2567 0.75 +0.3 2,714,996 - +1.1 2,715,031 + -0.2 2,715,154 - -0.8 2,715,292 + HP15_2568 0.10 +0.2 2,715,318 + HP15_2568 0.12 +0.3 2,715,377 - HP15_2568 0.17 +0.7 2,715,396 - HP15_2568 0.18 +0.7 2,715,452 + HP15_2568 0.23 +0.6 2,715,531 + HP15_2568 0.29 +0.5 2,715,656 - HP15_2568 0.38 +2.6 2,715,746 + HP15_2568 0.45 +2.5 2,715,758 + HP15_2568 0.46 +0.2 2,715,758 + HP15_2568 0.46 +0.5 2,715,825 + HP15_2568 0.51 -3.3 2,715,833 - HP15_2568 0.52 -0.3 2,715,896 + HP15_2568 0.56 +0.2 2,715,952 + HP15_2568 0.61 -0.4 2,715,957 + HP15_2568 0.61 +1.8 2,715,957 + HP15_2568 0.61 -0.7 2,716,017 - HP15_2568 0.66 +2.1 2,716,041 + HP15_2568 0.67 -2.5 2,716,049 - HP15_2568 0.68 +1.1 2,716,090 + HP15_2568 0.71 +1.8 2,716,127 + HP15_2568 0.74 -1.3 2,716,156 - HP15_2568 0.76 +0.3 2,716,179 + HP15_2568 0.78 +1.8 2,716,246 + HP15_2568 0.83 +1.3 2,716,438 - -0.7 2,716,463 + +0.3 2,716,623 - HP15_2569 0.49 -0.8 2,716,623 - HP15_2569 0.49 -1.5 2,716,633 - HP15_2569 0.52 -2.8 2,716,723 + HP15_2569 0.83 -0.7 2,716,749 - +0.9 2,716,768 - -0.3 2,716,879 + +1.4 2,717,103 - HP15_2570 0.12 +0.4 2,717,395 - HP15_2570 0.30 -2.6 2,717,398 + HP15_2570 0.30 -2.4
Or see this region's nucleotide sequence