Strain Fitness in Marinobacter adhaerens HP15 around HP15_2528

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2527 and HP15_2529 are separated by 67 nucleotidesHP15_2529 and HP15_2528 are separated by 6 nucleotidesHP15_2528 and HP15_2530 are separated by 95 nucleotides HP15_2527: HP15_2527 - DNA topoisomerase IV, subunit B, at 2,669,583 to 2,671,478 _2527 HP15_2529: HP15_2529 - conserved hypothetical protein, at 2,671,546 to 2,671,761 _2529 HP15_2528: HP15_2528 - hypothetical protein, at 2,671,768 to 2,671,923 _2528 HP15_2530: HP15_2530 - peptidase S8 and S53, subtilisin, kexin, sedolisin, at 2,672,019 to 2,674,580 _2530 Position (kb) 2671 2672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2671.590 kb on + strand, within HP15_2529at 2671.596 kb on - strand, within HP15_2529at 2671.668 kb on + strand, within HP15_2529at 2671.680 kb on + strand, within HP15_2529at 2671.680 kb on + strand, within HP15_2529at 2671.699 kb on + strand, within HP15_2529at 2671.710 kb on + strand, within HP15_2529at 2671.710 kb on + strand, within HP15_2529at 2671.724 kb on - strand, within HP15_2529at 2671.820 kb on - strand, within HP15_2528at 2671.837 kb on - strand, within HP15_2528at 2671.894 kb on + strand, within HP15_2528at 2671.969 kb on - strandat 2671.985 kb on - strandat 2672.008 kb on + strandat 2672.008 kb on - strandat 2672.150 kb on + strandat 2672.218 kb on + strandat 2672.218 kb on + strandat 2672.256 kb on + strandat 2672.372 kb on + strand, within HP15_2530at 2672.372 kb on + strand, within HP15_2530at 2672.417 kb on + strand, within HP15_2530at 2672.453 kb on + strand, within HP15_2530at 2672.480 kb on - strand, within HP15_2530at 2672.564 kb on + strand, within HP15_2530at 2672.679 kb on + strand, within HP15_2530at 2672.740 kb on + strand, within HP15_2530at 2672.745 kb on + strand, within HP15_2530at 2672.745 kb on + strand, within HP15_2530at 2672.745 kb on + strand, within HP15_2530at 2672.745 kb on + strand, within HP15_2530at 2672.745 kb on + strand, within HP15_2530at 2672.748 kb on - strand, within HP15_2530at 2672.753 kb on - strand, within HP15_2530at 2672.753 kb on - strand, within HP15_2530at 2672.772 kb on - strand, within HP15_2530at 2672.778 kb on + strand, within HP15_2530at 2672.825 kb on + strand, within HP15_2530at 2672.830 kb on + strand, within HP15_2530at 2672.889 kb on + strand, within HP15_2530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
2,671,590 + HP15_2529 0.20 -1.4
2,671,596 - HP15_2529 0.23 +0.7
2,671,668 + HP15_2529 0.56 +0.1
2,671,680 + HP15_2529 0.62 +0.2
2,671,680 + HP15_2529 0.62 +0.9
2,671,699 + HP15_2529 0.71 +0.5
2,671,710 + HP15_2529 0.76 -1.8
2,671,710 + HP15_2529 0.76 +0.7
2,671,724 - HP15_2529 0.82 -0.8
2,671,820 - HP15_2528 0.33 -0.6
2,671,837 - HP15_2528 0.44 -0.3
2,671,894 + HP15_2528 0.81 -0.6
2,671,969 - -0.5
2,671,985 - +0.5
2,672,008 + +2.1
2,672,008 - -0.0
2,672,150 + +0.2
2,672,218 + +1.5
2,672,218 + -0.8
2,672,256 + -0.4
2,672,372 + HP15_2530 0.14 +0.7
2,672,372 + HP15_2530 0.14 -0.8
2,672,417 + HP15_2530 0.16 -0.1
2,672,453 + HP15_2530 0.17 +1.0
2,672,480 - HP15_2530 0.18 -0.0
2,672,564 + HP15_2530 0.21 -0.4
2,672,679 + HP15_2530 0.26 +0.2
2,672,740 + HP15_2530 0.28 +1.2
2,672,745 + HP15_2530 0.28 -3.3
2,672,745 + HP15_2530 0.28 -0.2
2,672,745 + HP15_2530 0.28 -0.5
2,672,745 + HP15_2530 0.28 -3.5
2,672,745 + HP15_2530 0.28 -0.3
2,672,748 - HP15_2530 0.28 +0.0
2,672,753 - HP15_2530 0.29 -0.1
2,672,753 - HP15_2530 0.29 -1.2
2,672,772 - HP15_2530 0.29 -0.8
2,672,778 + HP15_2530 0.30 -1.0
2,672,825 + HP15_2530 0.31 -0.2
2,672,830 + HP15_2530 0.32 -0.4
2,672,889 + HP15_2530 0.34 -0.9

Or see this region's nucleotide sequence