Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2527 and HP15_2529 are separated by 67 nucleotides HP15_2529 and HP15_2528 are separated by 6 nucleotides HP15_2528 and HP15_2530 are separated by 95 nucleotides
HP15_2527: HP15_2527 - DNA topoisomerase IV, subunit B, at 2,669,583 to 2,671,478
_2527
HP15_2529: HP15_2529 - conserved hypothetical protein, at 2,671,546 to 2,671,761
_2529
HP15_2528: HP15_2528 - hypothetical protein, at 2,671,768 to 2,671,923
_2528
HP15_2530: HP15_2530 - peptidase S8 and S53, subtilisin, kexin, sedolisin, at 2,672,019 to 2,674,580
_2530
Position (kb)
2671
2672 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2671.590 kb on + strand, within HP15_2529 at 2671.596 kb on - strand, within HP15_2529 at 2671.668 kb on + strand, within HP15_2529 at 2671.680 kb on + strand, within HP15_2529 at 2671.680 kb on + strand, within HP15_2529 at 2671.699 kb on + strand, within HP15_2529 at 2671.710 kb on + strand, within HP15_2529 at 2671.710 kb on + strand, within HP15_2529 at 2671.724 kb on - strand, within HP15_2529 at 2671.820 kb on - strand, within HP15_2528 at 2671.837 kb on - strand, within HP15_2528 at 2671.894 kb on + strand, within HP15_2528 at 2671.969 kb on - strand at 2671.985 kb on - strand at 2672.008 kb on + strand at 2672.008 kb on - strand at 2672.150 kb on + strand at 2672.218 kb on + strand at 2672.218 kb on + strand at 2672.256 kb on + strand at 2672.372 kb on + strand, within HP15_2530 at 2672.372 kb on + strand, within HP15_2530 at 2672.417 kb on + strand, within HP15_2530 at 2672.453 kb on + strand, within HP15_2530 at 2672.480 kb on - strand, within HP15_2530 at 2672.564 kb on + strand, within HP15_2530 at 2672.679 kb on + strand, within HP15_2530 at 2672.740 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.745 kb on + strand, within HP15_2530 at 2672.748 kb on - strand, within HP15_2530 at 2672.753 kb on - strand, within HP15_2530 at 2672.753 kb on - strand, within HP15_2530 at 2672.772 kb on - strand, within HP15_2530 at 2672.778 kb on + strand, within HP15_2530 at 2672.825 kb on + strand, within HP15_2530 at 2672.830 kb on + strand, within HP15_2530 at 2672.889 kb on + strand, within HP15_2530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,671,590 + HP15_2529 0.20 -1.4 2,671,596 - HP15_2529 0.23 +0.7 2,671,668 + HP15_2529 0.56 +0.1 2,671,680 + HP15_2529 0.62 +0.2 2,671,680 + HP15_2529 0.62 +0.9 2,671,699 + HP15_2529 0.71 +0.5 2,671,710 + HP15_2529 0.76 -1.8 2,671,710 + HP15_2529 0.76 +0.7 2,671,724 - HP15_2529 0.82 -0.8 2,671,820 - HP15_2528 0.33 -0.6 2,671,837 - HP15_2528 0.44 -0.3 2,671,894 + HP15_2528 0.81 -0.6 2,671,969 - -0.5 2,671,985 - +0.5 2,672,008 + +2.1 2,672,008 - -0.0 2,672,150 + +0.2 2,672,218 + +1.5 2,672,218 + -0.8 2,672,256 + -0.4 2,672,372 + HP15_2530 0.14 +0.7 2,672,372 + HP15_2530 0.14 -0.8 2,672,417 + HP15_2530 0.16 -0.1 2,672,453 + HP15_2530 0.17 +1.0 2,672,480 - HP15_2530 0.18 -0.0 2,672,564 + HP15_2530 0.21 -0.4 2,672,679 + HP15_2530 0.26 +0.2 2,672,740 + HP15_2530 0.28 +1.2 2,672,745 + HP15_2530 0.28 -3.3 2,672,745 + HP15_2530 0.28 -0.2 2,672,745 + HP15_2530 0.28 -0.5 2,672,745 + HP15_2530 0.28 -3.5 2,672,745 + HP15_2530 0.28 -0.3 2,672,748 - HP15_2530 0.28 +0.0 2,672,753 - HP15_2530 0.29 -0.1 2,672,753 - HP15_2530 0.29 -1.2 2,672,772 - HP15_2530 0.29 -0.8 2,672,778 + HP15_2530 0.30 -1.0 2,672,825 + HP15_2530 0.31 -0.2 2,672,830 + HP15_2530 0.32 -0.4 2,672,889 + HP15_2530 0.34 -0.9
Or see this region's nucleotide sequence