Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2361 and HP15_2362 are separated by 41 nucleotides HP15_2362 and HP15_2363 overlap by 1 nucleotides
HP15_2361: HP15_2361 - 3-oxoacyl-(acyl carrier protein) reductase, at 2,486,975 to 2,487,736
_2361
HP15_2362: HP15_2362 - protein containing Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding domain, at 2,487,778 to 2,488,083
_2362
HP15_2363: HP15_2363 - major facilitator superfamily MFS_1, at 2,488,083 to 2,489,420
_2363
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2486.871 kb on - strand at 2486.927 kb on - strand at 2487.015 kb on + strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.052 kb on + strand, within HP15_2361 at 2487.053 kb on - strand, within HP15_2361 at 2487.076 kb on + strand, within HP15_2361 at 2487.220 kb on + strand, within HP15_2361 at 2487.273 kb on + strand, within HP15_2361 at 2487.298 kb on - strand, within HP15_2361 at 2487.313 kb on - strand at 2487.333 kb on + strand, within HP15_2361 at 2487.341 kb on - strand, within HP15_2361 at 2487.470 kb on + strand, within HP15_2361 at 2487.482 kb on + strand, within HP15_2361 at 2487.494 kb on + strand, within HP15_2361 at 2487.507 kb on - strand, within HP15_2361 at 2487.631 kb on + strand, within HP15_2361 at 2487.715 kb on + strand at 2487.715 kb on + strand at 2487.723 kb on - strand at 2487.773 kb on + strand at 2487.909 kb on + strand, within HP15_2362 at 2487.927 kb on - strand, within HP15_2362 at 2488.013 kb on - strand, within HP15_2362 at 2488.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,486,871 - -2.9 2,486,927 - +0.7 2,487,015 + -1.2 2,487,046 - +0.9 2,487,046 - +1.2 2,487,046 - +0.8 2,487,046 - +0.2 2,487,052 + HP15_2361 0.10 -0.8 2,487,053 - HP15_2361 0.10 -0.3 2,487,076 + HP15_2361 0.13 -0.7 2,487,220 + HP15_2361 0.32 +0.6 2,487,273 + HP15_2361 0.39 -0.4 2,487,298 - HP15_2361 0.42 -1.9 2,487,313 - +0.1 2,487,333 + HP15_2361 0.47 +0.4 2,487,341 - HP15_2361 0.48 +1.9 2,487,470 + HP15_2361 0.65 +2.1 2,487,482 + HP15_2361 0.67 -0.8 2,487,494 + HP15_2361 0.68 -0.4 2,487,507 - HP15_2361 0.70 +1.2 2,487,631 + HP15_2361 0.86 +0.4 2,487,715 + -0.1 2,487,715 + -0.4 2,487,723 - -4.4 2,487,773 + -0.2 2,487,909 + HP15_2362 0.43 -1.6 2,487,927 - HP15_2362 0.49 -0.8 2,488,013 - HP15_2362 0.77 -0.9 2,488,081 + -0.5
Or see this region's nucleotide sequence