Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2356 and HP15_2357 are separated by 1 nucleotides HP15_2357 and HP15_2358 are separated by 133 nucleotides HP15_2358 and HP15_2359 are separated by 123 nucleotides HP15_2359 and HP15_2360 are separated by 227 nucleotides
HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004
_2356
HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797
_2357
HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538
_2358
HP15_2359: HP15_2359 - chaperonin Cpn10, at 2,485,662 to 2,485,916
_2359
HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692
_2360
Position (kb)
2483
2484
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2482.988 kb on + strand at 2483.081 kb on - strand at 2483.339 kb on - strand, within HP15_2357 at 2483.345 kb on - strand, within HP15_2357 at 2483.348 kb on - strand, within HP15_2357 at 2483.412 kb on - strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.443 kb on + strand, within HP15_2357 at 2483.467 kb on + strand, within HP15_2357 at 2483.657 kb on - strand, within HP15_2357 at 2483.774 kb on + strand at 2483.774 kb on + strand at 2483.775 kb on + strand at 2483.809 kb on - strand at 2483.928 kb on + strand at 2486.217 kb on - strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.338 kb on - strand, within HP15_2360
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,482,988 + -0.5 2,483,081 - +1.4 2,483,339 - HP15_2357 0.42 -0.3 2,483,345 - HP15_2357 0.43 +3.6 2,483,348 - HP15_2357 0.43 +0.2 2,483,412 - HP15_2357 0.51 +2.0 2,483,443 + HP15_2357 0.55 -0.6 2,483,443 + HP15_2357 0.55 +0.0 2,483,467 + HP15_2357 0.58 +0.4 2,483,657 - HP15_2357 0.82 -0.9 2,483,774 + -0.1 2,483,774 + -1.9 2,483,775 + +0.9 2,483,809 - -1.3 2,483,928 + -0.8 2,486,217 - HP15_2360 0.13 +2.0 2,486,330 + HP15_2360 0.34 -0.4 2,486,330 + HP15_2360 0.34 +2.1 2,486,338 - HP15_2360 0.35 +1.3
Or see this region's nucleotide sequence