Strain Fitness in Marinobacter adhaerens HP15 around HP15_2358

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2356 and HP15_2357 are separated by 1 nucleotidesHP15_2357 and HP15_2358 are separated by 133 nucleotidesHP15_2358 and HP15_2359 are separated by 123 nucleotidesHP15_2359 and HP15_2360 are separated by 227 nucleotides HP15_2356: HP15_2356 - general secretion pathway protein C, at 2,482,153 to 2,483,004 _2356 HP15_2357: HP15_2357 - conserved hypothetical protein, at 2,483,006 to 2,483,797 _2357 HP15_2358: HP15_2358 - chaperonin GroEL, at 2,483,931 to 2,485,538 _2358 HP15_2359: HP15_2359 - chaperonin Cpn10, at 2,485,662 to 2,485,916 _2359 HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692 _2360 Position (kb) 2483 2484 2485 2486Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2482.988 kb on + strandat 2483.081 kb on - strandat 2483.339 kb on - strand, within HP15_2357at 2483.345 kb on - strand, within HP15_2357at 2483.348 kb on - strand, within HP15_2357at 2483.412 kb on - strand, within HP15_2357at 2483.443 kb on + strand, within HP15_2357at 2483.443 kb on + strand, within HP15_2357at 2483.467 kb on + strand, within HP15_2357at 2483.657 kb on - strand, within HP15_2357at 2483.774 kb on + strandat 2483.774 kb on + strandat 2483.775 kb on + strandat 2483.809 kb on - strandat 2483.928 kb on + strandat 2486.217 kb on - strand, within HP15_2360at 2486.330 kb on + strand, within HP15_2360at 2486.330 kb on + strand, within HP15_2360at 2486.338 kb on - strand, within HP15_2360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,482,988 + -0.5
2,483,081 - +1.4
2,483,339 - HP15_2357 0.42 -0.3
2,483,345 - HP15_2357 0.43 +3.6
2,483,348 - HP15_2357 0.43 +0.2
2,483,412 - HP15_2357 0.51 +2.0
2,483,443 + HP15_2357 0.55 -0.6
2,483,443 + HP15_2357 0.55 +0.0
2,483,467 + HP15_2357 0.58 +0.4
2,483,657 - HP15_2357 0.82 -0.9
2,483,774 + -0.1
2,483,774 + -1.9
2,483,775 + +0.9
2,483,809 - -1.3
2,483,928 + -0.8
2,486,217 - HP15_2360 0.13 +2.0
2,486,330 + HP15_2360 0.34 -0.4
2,486,330 + HP15_2360 0.34 +2.1
2,486,338 - HP15_2360 0.35 +1.3

Or see this region's nucleotide sequence