Strain Fitness in Marinobacter adhaerens HP15 around HP15_2331

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2330 and HP15_2331 are separated by 89 nucleotidesHP15_2331 and HP15_2332 are separated by 17 nucleotides HP15_2330: HP15_2330 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,450,168 to 2,451,601 _2330 HP15_2331: HP15_2331 - SOS cell division inhibitor, at 2,451,691 to 2,452,020 _2331 HP15_2332: HP15_2332 - secreted protein containing DUF1329, at 2,452,038 to 2,453,396 _2332 Position (kb) 2451 2452 2453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2450.850 kb on + strand, within HP15_2330at 2450.891 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2450.926 kb on + strand, within HP15_2330at 2451.009 kb on + strand, within HP15_2330at 2451.064 kb on + strand, within HP15_2330at 2451.181 kb on + strand, within HP15_2330at 2451.207 kb on - strand, within HP15_2330at 2451.249 kb on + strand, within HP15_2330at 2451.252 kb on - strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.254 kb on + strand, within HP15_2330at 2451.264 kb on + strand, within HP15_2330at 2451.272 kb on - strand, within HP15_2330at 2451.327 kb on + strand, within HP15_2330at 2451.354 kb on + strand, within HP15_2330at 2451.381 kb on + strand, within HP15_2330at 2451.388 kb on - strand, within HP15_2330at 2451.394 kb on - strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.396 kb on + strand, within HP15_2330at 2451.404 kb on - strand, within HP15_2330at 2451.491 kb on + strandat 2451.652 kb on + strandat 2451.660 kb on - strandat 2451.660 kb on - strandat 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.765 kb on - strand, within HP15_2331at 2451.822 kb on + strand, within HP15_2331at 2451.994 kb on + strandat 2452.001 kb on - strandat 2452.183 kb on + strand, within HP15_2332at 2452.222 kb on + strand, within HP15_2332at 2452.370 kb on - strand, within HP15_2332at 2452.493 kb on + strand, within HP15_2332at 2452.561 kb on - strand, within HP15_2332at 2452.679 kb on + strand, within HP15_2332at 2452.835 kb on - strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.935 kb on + strand, within HP15_2332at 2452.957 kb on + strand, within HP15_2332at 2453.016 kb on - strand, within HP15_2332

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,450,850 + HP15_2330 0.48 -0.3
2,450,891 + HP15_2330 0.50 -0.4
2,450,926 + HP15_2330 0.53 -1.3
2,450,926 + HP15_2330 0.53 +0.8
2,450,926 + HP15_2330 0.53 -4.3
2,451,009 + HP15_2330 0.59 -0.1
2,451,064 + HP15_2330 0.62 +0.4
2,451,181 + HP15_2330 0.71 +0.1
2,451,207 - HP15_2330 0.72 -0.3
2,451,249 + HP15_2330 0.75 -0.7
2,451,252 - HP15_2330 0.76 -0.6
2,451,254 + HP15_2330 0.76 +0.7
2,451,254 + HP15_2330 0.76 -0.1
2,451,264 + HP15_2330 0.76 -2.4
2,451,272 - HP15_2330 0.77 -0.5
2,451,327 + HP15_2330 0.81 -1.0
2,451,354 + HP15_2330 0.83 -0.0
2,451,381 + HP15_2330 0.85 -0.6
2,451,388 - HP15_2330 0.85 -0.8
2,451,394 - HP15_2330 0.85 +1.4
2,451,396 + HP15_2330 0.86 -2.2
2,451,396 + HP15_2330 0.86 +0.4
2,451,404 - HP15_2330 0.86 -0.1
2,451,491 + +0.0
2,451,652 + -0.5
2,451,660 - -1.9
2,451,660 - +1.3
2,451,765 - HP15_2331 0.22 -1.6
2,451,765 - HP15_2331 0.22 -1.5
2,451,765 - HP15_2331 0.22 -0.8
2,451,822 + HP15_2331 0.40 -0.0
2,451,994 + -0.4
2,452,001 - +2.8
2,452,183 + HP15_2332 0.11 +1.3
2,452,222 + HP15_2332 0.14 +1.6
2,452,370 - HP15_2332 0.24 +0.3
2,452,493 + HP15_2332 0.33 +0.3
2,452,561 - HP15_2332 0.38 -2.7
2,452,679 + HP15_2332 0.47 -0.4
2,452,835 - HP15_2332 0.59 +0.0
2,452,935 + HP15_2332 0.66 -0.6
2,452,935 + HP15_2332 0.66 +1.7
2,452,935 + HP15_2332 0.66 -0.5
2,452,957 + HP15_2332 0.68 -1.3
2,453,016 - HP15_2332 0.72 +0.1

Or see this region's nucleotide sequence