Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2309 and HP15_2310 are separated by 116 nucleotides HP15_2310 and HP15_2311 are separated by 3 nucleotides HP15_2311 and HP15_2312 are separated by 8 nucleotides
HP15_2309: HP15_2309 - flagellar biosynthesis protein FlhB, at 2,431,599 to 2,432,624
_2309
HP15_2310: HP15_2310 - flagellar biosynthesis protein FliR, at 2,432,741 to 2,433,526
_2310
HP15_2311: HP15_2311 - flagellar biosynthetic protein FliQ, at 2,433,530 to 2,433,799
_2311
HP15_2312: HP15_2312 - flagellar biosynthesis protein FliP, at 2,433,808 to 2,434,584
_2312
Position (kb)
2432
2433
2434 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2431.758 kb on + strand, within HP15_2309 at 2431.758 kb on + strand, within HP15_2309 at 2431.766 kb on - strand, within HP15_2309 at 2431.766 kb on - strand, within HP15_2309 at 2431.838 kb on - strand, within HP15_2309 at 2431.852 kb on + strand, within HP15_2309 at 2432.006 kb on - strand, within HP15_2309 at 2432.018 kb on - strand, within HP15_2309 at 2432.121 kb on + strand, within HP15_2309 at 2432.171 kb on - strand, within HP15_2309 at 2432.172 kb on - strand, within HP15_2309 at 2432.192 kb on + strand, within HP15_2309 at 2432.257 kb on + strand, within HP15_2309 at 2432.265 kb on - strand, within HP15_2309 at 2432.284 kb on + strand, within HP15_2309 at 2432.297 kb on + strand, within HP15_2309 at 2432.407 kb on - strand, within HP15_2309 at 2432.409 kb on + strand, within HP15_2309 at 2432.641 kb on - strand at 2432.660 kb on + strand at 2433.022 kb on + strand, within HP15_2310 at 2433.030 kb on - strand, within HP15_2310 at 2433.051 kb on + strand, within HP15_2310 at 2433.153 kb on - strand, within HP15_2310 at 2433.153 kb on - strand, within HP15_2310 at 2433.162 kb on - strand, within HP15_2310 at 2433.170 kb on - strand, within HP15_2310 at 2433.191 kb on + strand, within HP15_2310 at 2433.199 kb on - strand, within HP15_2310 at 2433.324 kb on + strand, within HP15_2310 at 2433.362 kb on + strand, within HP15_2310 at 2433.369 kb on + strand, within HP15_2310 at 2433.385 kb on + strand, within HP15_2310 at 2433.553 kb on - strand at 2433.584 kb on - strand, within HP15_2311 at 2433.658 kb on - strand, within HP15_2311 at 2433.690 kb on + strand, within HP15_2311 at 2433.690 kb on + strand, within HP15_2311 at 2433.697 kb on + strand, within HP15_2311 at 2433.723 kb on - strand, within HP15_2311 at 2433.758 kb on - strand, within HP15_2311 at 2433.831 kb on - strand at 2433.896 kb on - strand, within HP15_2312 at 2433.925 kb on - strand, within HP15_2312 at 2434.012 kb on - strand, within HP15_2312 at 2434.062 kb on - strand, within HP15_2312 at 2434.088 kb on + strand, within HP15_2312 at 2434.144 kb on + strand, within HP15_2312 at 2434.167 kb on + strand, within HP15_2312 at 2434.175 kb on - strand, within HP15_2312 at 2434.214 kb on + strand, within HP15_2312 at 2434.263 kb on + strand, within HP15_2312 at 2434.270 kb on + strand, within HP15_2312 at 2434.293 kb on + strand, within HP15_2312 at 2434.295 kb on + strand, within HP15_2312 at 2434.395 kb on - strand, within HP15_2312 at 2434.427 kb on + strand, within HP15_2312
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,431,758 + HP15_2309 0.15 +2.5 2,431,758 + HP15_2309 0.15 -0.1 2,431,766 - HP15_2309 0.16 -1.1 2,431,766 - HP15_2309 0.16 -0.5 2,431,838 - HP15_2309 0.23 -3.6 2,431,852 + HP15_2309 0.25 -0.7 2,432,006 - HP15_2309 0.40 -2.5 2,432,018 - HP15_2309 0.41 -2.8 2,432,121 + HP15_2309 0.51 -0.6 2,432,171 - HP15_2309 0.56 -0.7 2,432,172 - HP15_2309 0.56 +0.4 2,432,192 + HP15_2309 0.58 +0.5 2,432,257 + HP15_2309 0.64 -0.8 2,432,265 - HP15_2309 0.65 +2.2 2,432,284 + HP15_2309 0.67 -0.3 2,432,297 + HP15_2309 0.68 -0.7 2,432,407 - HP15_2309 0.79 +1.1 2,432,409 + HP15_2309 0.79 -1.0 2,432,641 - -3.1 2,432,660 + -0.9 2,433,022 + HP15_2310 0.36 -2.7 2,433,030 - HP15_2310 0.37 -0.8 2,433,051 + HP15_2310 0.39 -0.5 2,433,153 - HP15_2310 0.52 -1.1 2,433,153 - HP15_2310 0.52 +0.1 2,433,162 - HP15_2310 0.54 -0.6 2,433,170 - HP15_2310 0.55 -0.9 2,433,191 + HP15_2310 0.57 +0.4 2,433,199 - HP15_2310 0.58 -2.2 2,433,324 + HP15_2310 0.74 -2.1 2,433,362 + HP15_2310 0.79 +1.7 2,433,369 + HP15_2310 0.80 -0.7 2,433,385 + HP15_2310 0.82 -0.4 2,433,553 - -0.6 2,433,584 - HP15_2311 0.20 -0.8 2,433,658 - HP15_2311 0.47 -1.6 2,433,690 + HP15_2311 0.59 -0.0 2,433,690 + HP15_2311 0.59 +0.2 2,433,697 + HP15_2311 0.62 -1.1 2,433,723 - HP15_2311 0.71 -1.1 2,433,758 - HP15_2311 0.84 -0.7 2,433,831 - -0.8 2,433,896 - HP15_2312 0.11 -1.8 2,433,925 - HP15_2312 0.15 -0.2 2,434,012 - HP15_2312 0.26 -2.5 2,434,062 - HP15_2312 0.33 +1.1 2,434,088 + HP15_2312 0.36 -0.9 2,434,144 + HP15_2312 0.43 -0.3 2,434,167 + HP15_2312 0.46 -0.4 2,434,175 - HP15_2312 0.47 -1.1 2,434,214 + HP15_2312 0.52 -1.0 2,434,263 + HP15_2312 0.59 -1.0 2,434,270 + HP15_2312 0.59 +0.4 2,434,293 + HP15_2312 0.62 -1.1 2,434,295 + HP15_2312 0.63 +1.0 2,434,395 - HP15_2312 0.76 -3.1 2,434,427 + HP15_2312 0.80 -0.7
Or see this region's nucleotide sequence