Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2271 and HP15_2272 overlap by 4 nucleotides HP15_2272 and HP15_2273 overlap by 7 nucleotides HP15_2273 and HP15_2274 overlap by 11 nucleotides
HP15_2271: HP15_2271 - protein containing DUF58, at 2,395,401 to 2,396,342
_2271
HP15_2272: HP15_2272 - conserved hypothetical protein, at 2,396,339 to 2,396,809
_2272
HP15_2273: HP15_2273 - von Willebrand factor type A domain protein, at 2,396,803 to 2,397,831
_2273
HP15_2274: HP15_2274 - TPR repeat-containing protein, at 2,397,821 to 2,399,635
_2274
Position (kb)
2396
2397
2398 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2395.909 kb on - strand, within HP15_2271 at 2395.951 kb on + strand at 2395.980 kb on + strand, within HP15_2271 at 2396.160 kb on + strand, within HP15_2271 at 2396.259 kb on - strand at 2396.283 kb on + strand at 2396.315 kb on + strand at 2396.366 kb on + strand at 2396.435 kb on + strand, within HP15_2272 at 2396.459 kb on + strand, within HP15_2272 at 2396.573 kb on + strand, within HP15_2272 at 2396.621 kb on - strand, within HP15_2272 at 2396.694 kb on + strand, within HP15_2272 at 2396.702 kb on - strand, within HP15_2272 at 2396.735 kb on - strand, within HP15_2272 at 2396.788 kb on + strand at 2396.828 kb on - strand at 2396.841 kb on + strand at 2396.870 kb on + strand at 2396.944 kb on - strand, within HP15_2273 at 2397.022 kb on - strand, within HP15_2273 at 2397.114 kb on + strand, within HP15_2273 at 2397.203 kb on + strand, within HP15_2273 at 2397.217 kb on - strand, within HP15_2273 at 2397.278 kb on - strand, within HP15_2273 at 2397.408 kb on + strand, within HP15_2273 at 2397.435 kb on + strand, within HP15_2273 at 2397.520 kb on - strand, within HP15_2273 at 2397.756 kb on + strand at 2398.116 kb on + strand, within HP15_2274 at 2398.259 kb on - strand, within HP15_2274 at 2398.365 kb on + strand, within HP15_2274 at 2398.448 kb on + strand, within HP15_2274 at 2398.516 kb on - strand, within HP15_2274 at 2398.767 kb on - strand, within HP15_2274 at 2398.772 kb on - strand, within HP15_2274
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,395,909 - HP15_2271 0.54 +0.1 2,395,951 + +1.1 2,395,980 + HP15_2271 0.61 +0.2 2,396,160 + HP15_2271 0.81 +0.2 2,396,259 - -0.7 2,396,283 + +1.7 2,396,315 + +0.1 2,396,366 + -1.9 2,396,435 + HP15_2272 0.20 -0.6 2,396,459 + HP15_2272 0.25 +1.7 2,396,573 + HP15_2272 0.50 -0.3 2,396,621 - HP15_2272 0.60 +0.7 2,396,694 + HP15_2272 0.75 -2.9 2,396,702 - HP15_2272 0.77 +0.1 2,396,735 - HP15_2272 0.84 +0.2 2,396,788 + +1.3 2,396,828 - +0.3 2,396,841 + -0.5 2,396,870 + +0.0 2,396,944 - HP15_2273 0.14 +0.1 2,397,022 - HP15_2273 0.21 +1.6 2,397,114 + HP15_2273 0.30 +0.3 2,397,203 + HP15_2273 0.39 +1.9 2,397,217 - HP15_2273 0.40 +1.3 2,397,278 - HP15_2273 0.46 +2.6 2,397,408 + HP15_2273 0.59 -0.9 2,397,435 + HP15_2273 0.61 -0.2 2,397,520 - HP15_2273 0.70 +0.5 2,397,756 + +0.2 2,398,116 + HP15_2274 0.16 +0.6 2,398,259 - HP15_2274 0.24 +1.7 2,398,365 + HP15_2274 0.30 +0.3 2,398,448 + HP15_2274 0.35 +1.7 2,398,516 - HP15_2274 0.38 -2.4 2,398,767 - HP15_2274 0.52 -1.3 2,398,772 - HP15_2274 0.52 -0.3
Or see this region's nucleotide sequence