Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2176 and HP15_2177 are separated by 282 nucleotides HP15_2177 and HP15_2178 are separated by 17 nucleotides HP15_2178 and HP15_2179 overlap by 8 nucleotides
HP15_2176: HP15_2176 - pyruvate kinase II, at 2,287,110 to 2,288,558
_2176
HP15_2177: HP15_2177 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, at 2,288,841 to 2,289,506
_2177
HP15_2178: HP15_2178 - 6-phosphogluconolactonase, at 2,289,524 to 2,290,237
_2178
HP15_2179: HP15_2179 - glucose-6-phosphate 1-dehydrogenase, at 2,290,230 to 2,291,705
_2179
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2287.948 kb on - strand, within HP15_2176 at 2287.968 kb on + strand, within HP15_2176 at 2288.191 kb on + strand, within HP15_2176 at 2288.232 kb on - strand, within HP15_2176 at 2288.256 kb on + strand, within HP15_2176 at 2288.295 kb on + strand, within HP15_2176 at 2288.676 kb on + strand at 2288.725 kb on - strand at 2288.767 kb on - strand at 2288.860 kb on + strand at 2288.868 kb on - strand at 2288.952 kb on - strand, within HP15_2177 at 2289.197 kb on + strand, within HP15_2177 at 2289.229 kb on + strand, within HP15_2177 at 2289.285 kb on - strand, within HP15_2177 at 2289.444 kb on - strand at 2289.590 kb on + strand at 2289.681 kb on - strand, within HP15_2178 at 2289.686 kb on - strand, within HP15_2178 at 2289.815 kb on - strand, within HP15_2178 at 2289.834 kb on + strand, within HP15_2178 at 2289.842 kb on - strand, within HP15_2178 at 2289.872 kb on - strand, within HP15_2178 at 2289.901 kb on - strand, within HP15_2178 at 2290.024 kb on + strand, within HP15_2178 at 2290.040 kb on + strand, within HP15_2178 at 2290.174 kb on - strand at 2290.407 kb on - strand, within HP15_2179 at 2290.408 kb on + strand at 2290.501 kb on - strand, within HP15_2179
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,287,948 - HP15_2176 0.58 -0.4 2,287,968 + HP15_2176 0.59 +1.0 2,288,191 + HP15_2176 0.75 +0.6 2,288,232 - HP15_2176 0.77 +0.0 2,288,256 + HP15_2176 0.79 +1.0 2,288,295 + HP15_2176 0.82 +0.7 2,288,676 + -1.0 2,288,725 - +0.6 2,288,767 - +0.3 2,288,860 + -0.4 2,288,868 - +1.3 2,288,952 - HP15_2177 0.17 -1.4 2,289,197 + HP15_2177 0.53 -2.0 2,289,229 + HP15_2177 0.58 -2.1 2,289,285 - HP15_2177 0.67 +2.0 2,289,444 - +0.1 2,289,590 + +1.0 2,289,681 - HP15_2178 0.22 +0.6 2,289,686 - HP15_2178 0.23 +3.7 2,289,815 - HP15_2178 0.41 -0.4 2,289,834 + HP15_2178 0.43 +0.3 2,289,842 - HP15_2178 0.45 -1.1 2,289,872 - HP15_2178 0.49 +0.0 2,289,901 - HP15_2178 0.53 +1.3 2,290,024 + HP15_2178 0.70 +0.0 2,290,040 + HP15_2178 0.72 -1.4 2,290,174 - -3.7 2,290,407 - HP15_2179 0.12 +0.0 2,290,408 + -1.5 2,290,501 - HP15_2179 0.18 +1.8
Or see this region's nucleotide sequence