Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2143 and HP15_2144 are separated by 292 nucleotides HP15_2144 and HP15_2145 are separated by 11 nucleotides HP15_2145 and HP15_2146 are separated by 89 nucleotides
HP15_2143: HP15_2143 - conserved hypothetical protein, at 2,245,274 to 2,246,383
_2143
HP15_2144: HP15_2144 - redoxin domain protein, at 2,246,676 to 2,247,179
_2144
HP15_2145: HP15_2145 - conserved hypothetical protein, at 2,247,191 to 2,247,715
_2145
HP15_2146: HP15_2146 - conserved hypothetical protein, secreted, at 2,247,805 to 2,248,557
_2146
Position (kb)
2246
2247
2248 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2245.850 kb on + strand, within HP15_2143 at 2245.857 kb on + strand, within HP15_2143 at 2246.058 kb on + strand, within HP15_2143 at 2246.158 kb on + strand, within HP15_2143 at 2246.178 kb on - strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.217 kb on + strand, within HP15_2143 at 2246.230 kb on - strand, within HP15_2143 at 2246.257 kb on - strand, within HP15_2143 at 2246.404 kb on + strand at 2246.412 kb on - strand at 2246.793 kb on + strand, within HP15_2144 at 2246.925 kb on + strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.127 kb on - strand, within HP15_2144 at 2247.208 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.213 kb on + strand at 2247.221 kb on - strand at 2247.221 kb on - strand at 2247.404 kb on + strand, within HP15_2145 at 2247.595 kb on + strand, within HP15_2145 at 2247.697 kb on + strand at 2247.784 kb on - strand at 2247.880 kb on + strand at 2247.944 kb on - strand, within HP15_2146 at 2247.979 kb on - strand, within HP15_2146 at 2248.006 kb on - strand, within HP15_2146 at 2248.038 kb on - strand, within HP15_2146 at 2248.110 kb on - strand, within HP15_2146 at 2248.137 kb on + strand, within HP15_2146 at 2248.158 kb on - strand, within HP15_2146
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,245,850 + HP15_2143 0.52 -0.5 2,245,857 + HP15_2143 0.53 +0.0 2,246,058 + HP15_2143 0.71 -0.2 2,246,158 + HP15_2143 0.80 -1.0 2,246,178 - HP15_2143 0.81 +0.4 2,246,217 + HP15_2143 0.85 +0.5 2,246,217 + HP15_2143 0.85 +1.0 2,246,230 - HP15_2143 0.86 -1.2 2,246,257 - HP15_2143 0.89 +0.5 2,246,404 + -2.7 2,246,412 - -4.3 2,246,793 + HP15_2144 0.23 -2.2 2,246,925 + HP15_2144 0.49 -3.9 2,247,127 - HP15_2144 0.89 +1.9 2,247,127 - HP15_2144 0.89 -1.3 2,247,208 + -1.5 2,247,213 + +3.0 2,247,213 + -0.5 2,247,213 + +1.3 2,247,221 - -0.3 2,247,221 - -0.5 2,247,404 + HP15_2145 0.41 -2.8 2,247,595 + HP15_2145 0.77 -0.6 2,247,697 + -0.1 2,247,784 - +0.1 2,247,880 + -0.7 2,247,944 - HP15_2146 0.18 +0.4 2,247,979 - HP15_2146 0.23 -0.2 2,248,006 - HP15_2146 0.27 +0.9 2,248,038 - HP15_2146 0.31 +0.5 2,248,110 - HP15_2146 0.41 -0.4 2,248,137 + HP15_2146 0.44 +1.0 2,248,158 - HP15_2146 0.47 +0.2
Or see this region's nucleotide sequence