Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2093 and HP15_2094 are separated by 9 nucleotides HP15_2094 and HP15_2095 are separated by 159 nucleotides
HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613
_2093
HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207
_2094
HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581
_2095
Position (kb)
2193
2194
2195 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2192.778 kb on + strand, within HP15_2093 at 2192.778 kb on + strand, within HP15_2093 at 2192.786 kb on - strand, within HP15_2093 at 2192.810 kb on + strand, within HP15_2093 at 2192.818 kb on - strand, within HP15_2093 at 2192.881 kb on + strand, within HP15_2093 at 2193.023 kb on + strand, within HP15_2093 at 2193.097 kb on - strand, within HP15_2093 at 2193.110 kb on - strand, within HP15_2093 at 2193.365 kb on - strand, within HP15_2093 at 2193.387 kb on - strand at 2193.621 kb on + strand at 2193.722 kb on - strand, within HP15_2094 at 2193.755 kb on + strand, within HP15_2094 at 2193.866 kb on + strand, within HP15_2094 at 2193.879 kb on - strand, within HP15_2094 at 2193.934 kb on - strand, within HP15_2094 at 2194.058 kb on - strand, within HP15_2094 at 2194.156 kb on + strand at 2194.158 kb on + strand at 2194.166 kb on - strand at 2194.435 kb on - strand at 2194.569 kb on + strand, within HP15_2095 at 2194.738 kb on - strand, within HP15_2095 at 2194.793 kb on + strand, within HP15_2095 at 2194.920 kb on + strand, within HP15_2095 at 2194.971 kb on + strand, within HP15_2095 at 2195.018 kb on + strand, within HP15_2095 at 2195.088 kb on - strand, within HP15_2095 at 2195.122 kb on - strand, within HP15_2095
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,192,778 + HP15_2093 0.64 +2.2 2,192,778 + HP15_2093 0.64 +1.9 2,192,786 - HP15_2093 0.64 +1.5 2,192,810 + HP15_2093 0.65 +1.4 2,192,818 - HP15_2093 0.66 +2.4 2,192,881 + HP15_2093 0.69 +2.6 2,193,023 + HP15_2093 0.75 +2.4 2,193,097 - HP15_2093 0.78 -0.7 2,193,110 - HP15_2093 0.78 +0.6 2,193,365 - HP15_2093 0.89 +0.8 2,193,387 - +0.5 2,193,621 + -0.5 2,193,722 - HP15_2094 0.17 -2.0 2,193,755 + HP15_2094 0.23 +2.2 2,193,866 + HP15_2094 0.42 -0.9 2,193,879 - HP15_2094 0.44 -1.8 2,193,934 - HP15_2094 0.53 -0.2 2,194,058 - HP15_2094 0.74 -2.1 2,194,156 + +2.1 2,194,158 + -2.3 2,194,166 - +0.5 2,194,435 - -1.4 2,194,569 + HP15_2095 0.17 +0.7 2,194,738 - HP15_2095 0.31 +0.7 2,194,793 + HP15_2095 0.35 -1.0 2,194,920 + HP15_2095 0.46 -1.0 2,194,971 + HP15_2095 0.50 -2.3 2,195,018 + HP15_2095 0.54 +0.5 2,195,088 - HP15_2095 0.59 -1.2 2,195,122 - HP15_2095 0.62 +0.2
Or see this region's nucleotide sequence