Strain Fitness in Marinobacter adhaerens HP15 around HP15_2094

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2093 and HP15_2094 are separated by 9 nucleotidesHP15_2094 and HP15_2095 are separated by 159 nucleotides HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613 _2093 HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207 _2094 HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581 _2095 Position (kb) 2193 2194 2195Strain fitness (log2 ratio) -2 -1 0 1 2at 2192.778 kb on + strand, within HP15_2093at 2192.778 kb on + strand, within HP15_2093at 2192.786 kb on - strand, within HP15_2093at 2192.810 kb on + strand, within HP15_2093at 2192.818 kb on - strand, within HP15_2093at 2192.881 kb on + strand, within HP15_2093at 2193.023 kb on + strand, within HP15_2093at 2193.097 kb on - strand, within HP15_2093at 2193.110 kb on - strand, within HP15_2093at 2193.365 kb on - strand, within HP15_2093at 2193.387 kb on - strandat 2193.621 kb on + strandat 2193.722 kb on - strand, within HP15_2094at 2193.755 kb on + strand, within HP15_2094at 2193.866 kb on + strand, within HP15_2094at 2193.879 kb on - strand, within HP15_2094at 2193.934 kb on - strand, within HP15_2094at 2194.058 kb on - strand, within HP15_2094at 2194.156 kb on + strandat 2194.158 kb on + strandat 2194.166 kb on - strandat 2194.435 kb on - strandat 2194.569 kb on + strand, within HP15_2095at 2194.738 kb on - strand, within HP15_2095at 2194.793 kb on + strand, within HP15_2095at 2194.920 kb on + strand, within HP15_2095at 2194.971 kb on + strand, within HP15_2095at 2195.018 kb on + strand, within HP15_2095at 2195.088 kb on - strand, within HP15_2095at 2195.122 kb on - strand, within HP15_2095

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,192,778 + HP15_2093 0.64 +2.2
2,192,778 + HP15_2093 0.64 +1.9
2,192,786 - HP15_2093 0.64 +1.5
2,192,810 + HP15_2093 0.65 +1.4
2,192,818 - HP15_2093 0.66 +2.4
2,192,881 + HP15_2093 0.69 +2.6
2,193,023 + HP15_2093 0.75 +2.4
2,193,097 - HP15_2093 0.78 -0.7
2,193,110 - HP15_2093 0.78 +0.6
2,193,365 - HP15_2093 0.89 +0.8
2,193,387 - +0.5
2,193,621 + -0.5
2,193,722 - HP15_2094 0.17 -2.0
2,193,755 + HP15_2094 0.23 +2.2
2,193,866 + HP15_2094 0.42 -0.9
2,193,879 - HP15_2094 0.44 -1.8
2,193,934 - HP15_2094 0.53 -0.2
2,194,058 - HP15_2094 0.74 -2.1
2,194,156 + +2.1
2,194,158 + -2.3
2,194,166 - +0.5
2,194,435 - -1.4
2,194,569 + HP15_2095 0.17 +0.7
2,194,738 - HP15_2095 0.31 +0.7
2,194,793 + HP15_2095 0.35 -1.0
2,194,920 + HP15_2095 0.46 -1.0
2,194,971 + HP15_2095 0.50 -2.3
2,195,018 + HP15_2095 0.54 +0.5
2,195,088 - HP15_2095 0.59 -1.2
2,195,122 - HP15_2095 0.62 +0.2

Or see this region's nucleotide sequence