Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21380 and PGA1_c21390 are separated by 62 nucleotides PGA1_c21390 and PGA1_c21400 are separated by 10 nucleotides PGA1_c21400 and PGA1_c21410 overlap by 8 nucleotides
PGA1_c21380: PGA1_c21380 - putative oxidoreductases, at 2,214,229 to 2,216,295
_c21380
PGA1_c21390: PGA1_c21390 - hypothetical protein, at 2,216,358 to 2,217,044
_c21390
PGA1_c21400: PGA1_c21400 - lipoprotein-releasing system ATP-binding protein LolD, at 2,217,055 to 2,217,768
_c21400
PGA1_c21410: PGA1_c21410 - lipoprotein-releasing system transmembrane protein LolC, at 2,217,761 to 2,219,053
_c21410
Position (kb)
2217
2218 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2216.092 kb on + strand at 2216.102 kb on + strand at 2216.109 kb on - strand at 2216.110 kb on - strand at 2216.138 kb on + strand at 2216.159 kb on - strand at 2216.206 kb on + strand at 2216.272 kb on - strand at 2216.318 kb on - strand at 2216.342 kb on + strand at 2216.348 kb on + strand at 2216.376 kb on - strand at 2216.389 kb on + strand at 2216.389 kb on + strand at 2216.389 kb on + strand at 2216.389 kb on + strand at 2216.389 kb on + strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.397 kb on - strand at 2216.420 kb on + strand at 2216.458 kb on + strand, within PGA1_c21390 at 2216.466 kb on - strand, within PGA1_c21390 at 2216.497 kb on - strand, within PGA1_c21390 at 2216.618 kb on + strand, within PGA1_c21390 at 2216.626 kb on - strand, within PGA1_c21390 at 2216.674 kb on + strand, within PGA1_c21390 at 2216.674 kb on + strand, within PGA1_c21390 at 2216.677 kb on - strand, within PGA1_c21390 at 2216.721 kb on - strand, within PGA1_c21390 at 2216.794 kb on + strand, within PGA1_c21390 at 2216.814 kb on - strand, within PGA1_c21390 at 2216.857 kb on + strand, within PGA1_c21390 at 2216.862 kb on - strand, within PGA1_c21390 at 2216.965 kb on + strand, within PGA1_c21390 at 2216.965 kb on + strand, within PGA1_c21390 at 2216.968 kb on - strand, within PGA1_c21390 at 2216.972 kb on - strand, within PGA1_c21390 at 2216.973 kb on - strand, within PGA1_c21390 at 2217.073 kb on - strand at 2217.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,216,092 + +0.1 2,216,102 + +0.4 2,216,109 - -0.3 2,216,110 - +1.0 2,216,138 + +1.7 2,216,159 - -3.4 2,216,206 + +0.5 2,216,272 - +2.2 2,216,318 - -0.0 2,216,342 + +1.1 2,216,348 + -2.1 2,216,376 - -1.2 2,216,389 + -1.7 2,216,389 + -0.9 2,216,389 + +1.4 2,216,389 + -0.2 2,216,389 + +0.6 2,216,397 - -3.2 2,216,397 - -0.5 2,216,397 - -0.9 2,216,397 - +2.5 2,216,397 - -1.7 2,216,397 - -1.6 2,216,397 - +1.0 2,216,397 - +1.2 2,216,397 - -0.6 2,216,397 - -1.9 2,216,397 - -1.9 2,216,397 - -0.1 2,216,397 - +1.1 2,216,397 - +1.3 2,216,397 - -1.7 2,216,397 - -2.1 2,216,420 + -1.5 2,216,458 + PGA1_c21390 0.15 +2.2 2,216,466 - PGA1_c21390 0.16 -1.7 2,216,497 - PGA1_c21390 0.20 -0.2 2,216,618 + PGA1_c21390 0.38 -0.8 2,216,626 - PGA1_c21390 0.39 +0.0 2,216,674 + PGA1_c21390 0.46 +1.3 2,216,674 + PGA1_c21390 0.46 +0.7 2,216,677 - PGA1_c21390 0.46 +3.3 2,216,721 - PGA1_c21390 0.53 -0.9 2,216,794 + PGA1_c21390 0.63 +2.9 2,216,814 - PGA1_c21390 0.66 -0.9 2,216,857 + PGA1_c21390 0.73 -0.9 2,216,862 - PGA1_c21390 0.73 -2.8 2,216,965 + PGA1_c21390 0.88 -4.2 2,216,965 + PGA1_c21390 0.88 +0.1 2,216,968 - PGA1_c21390 0.89 +2.1 2,216,972 - PGA1_c21390 0.89 +1.8 2,216,973 - PGA1_c21390 0.90 -0.6 2,217,073 - +1.8 2,217,073 - -0.5
Or see this region's nucleotide sequence