Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_206 and HP15_207 are separated by 76 nucleotides HP15_207 and HP15_208 are separated by 89 nucleotides HP15_208 and HP15_209 are separated by 9 nucleotides HP15_209 and HP15_210 are separated by 143 nucleotides
HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837
_206
HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120
_207
HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686
_208
HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054
_209
HP15_210: HP15_210 - phospholipase A(1), at 197,198 to 198,325
_210
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 194.792 kb on + strand at 194.823 kb on - strand at 194.922 kb on - strand at 194.936 kb on + strand, within HP15_207 at 195.163 kb on + strand at 195.177 kb on - strand at 195.249 kb on + strand at 195.525 kb on + strand, within HP15_208 at 195.556 kb on + strand, within HP15_208 at 195.702 kb on - strand at 195.762 kb on - strand at 195.829 kb on - strand at 195.868 kb on + strand, within HP15_209 at 195.922 kb on - strand, within HP15_209 at 195.927 kb on - strand, within HP15_209 at 195.929 kb on + strand, within HP15_209 at 195.967 kb on + strand, within HP15_209 at 196.007 kb on - strand, within HP15_209 at 196.024 kb on + strand, within HP15_209 at 196.080 kb on - strand, within HP15_209 at 196.127 kb on + strand, within HP15_209 at 196.482 kb on + strand, within HP15_209 at 196.516 kb on - strand, within HP15_209 at 196.643 kb on - strand, within HP15_209 at 196.743 kb on + strand, within HP15_209 at 196.751 kb on - strand, within HP15_209 at 196.826 kb on + strand, within HP15_209 at 197.002 kb on - strand at 197.121 kb on + strand at 197.155 kb on + strand at 197.172 kb on + strand at 197.215 kb on + strand at 197.215 kb on + strand at 197.223 kb on - strand at 197.234 kb on - strand at 197.297 kb on + strand at 197.307 kb on - strand at 197.411 kb on + strand, within HP15_210 at 197.445 kb on - strand, within HP15_210 at 197.594 kb on - strand, within HP15_210 at 197.594 kb on - strand, within HP15_210 at 197.710 kb on + strand, within HP15_210 at 197.717 kb on + strand, within HP15_210 at 197.725 kb on - strand, within HP15_210 at 197.743 kb on + strand, within HP15_210 at 197.751 kb on - strand, within HP15_210 at 197.800 kb on + strand, within HP15_210 at 197.925 kb on - strand, within HP15_210 at 197.925 kb on - strand, within HP15_210 at 198.011 kb on - strand, within HP15_210 at 198.029 kb on + strand, within HP15_210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 194,792 + +0.5 194,823 - +0.1 194,922 - +0.1 194,936 + HP15_207 0.11 -1.2 195,163 + +0.2 195,177 - +1.3 195,249 + -1.8 195,525 + HP15_208 0.66 +1.4 195,556 + HP15_208 0.73 +1.5 195,702 - +1.2 195,762 - +0.2 195,829 - +0.2 195,868 + HP15_209 0.13 +0.7 195,922 - HP15_209 0.17 -0.2 195,927 - HP15_209 0.17 +0.5 195,929 + HP15_209 0.17 +0.9 195,967 + HP15_209 0.20 +0.6 196,007 - HP15_209 0.23 +0.2 196,024 + HP15_209 0.24 +1.0 196,080 - HP15_209 0.28 +0.1 196,127 + HP15_209 0.32 -0.5 196,482 + HP15_209 0.58 +2.9 196,516 - HP15_209 0.60 -1.8 196,643 - HP15_209 0.70 +3.2 196,743 + HP15_209 0.77 -0.5 196,751 - HP15_209 0.78 -1.1 196,826 + HP15_209 0.83 +0.5 197,002 - +0.2 197,121 + -0.2 197,155 + -0.8 197,172 + +2.7 197,215 + -0.6 197,215 + +1.1 197,223 - +1.9 197,234 - +1.8 197,297 + +0.1 197,307 - -1.4 197,411 + HP15_210 0.19 +1.3 197,445 - HP15_210 0.22 +1.0 197,594 - HP15_210 0.35 -0.2 197,594 - HP15_210 0.35 -0.8 197,710 + HP15_210 0.45 +1.4 197,717 + HP15_210 0.46 +0.4 197,725 - HP15_210 0.47 +0.3 197,743 + HP15_210 0.48 +1.0 197,751 - HP15_210 0.49 -0.2 197,800 + HP15_210 0.53 -0.0 197,925 - HP15_210 0.64 +0.2 197,925 - HP15_210 0.64 -0.7 198,011 - HP15_210 0.72 -0.3 198,029 + HP15_210 0.74 +0.1
Or see this region's nucleotide sequence