Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1979 and HP15_1980 are separated by 16 nucleotides HP15_1980 and HP15_1981 are separated by 66 nucleotides HP15_1981 and HP15_1982 are separated by 87 nucleotides HP15_1982 and HP15_1983 are separated by 189 nucleotides
HP15_1979: HP15_1979 - conserved hypothetical protein, at 2,093,414 to 2,094,997
_1979
HP15_1980: HP15_1980 - virulence-associated E family protein, at 2,095,014 to 2,095,910
_1980
HP15_1981: HP15_1981 - conserved hypothetical protein, at 2,095,977 to 2,096,213
_1981
HP15_1982: HP15_1982 - hypothetical protein, at 2,096,301 to 2,096,717
_1982
HP15_1983: HP15_1983 - hypothetical protein, at 2,096,907 to 2,097,542
_1983
Position (kb)
2095
2096
2097 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2094.979 kb on + strand at 2095.016 kb on + strand at 2095.044 kb on + strand at 2095.090 kb on + strand at 2095.158 kb on + strand, within HP15_1980 at 2095.158 kb on + strand, within HP15_1980 at 2095.161 kb on - strand, within HP15_1980 at 2095.166 kb on - strand, within HP15_1980 at 2095.166 kb on - strand, within HP15_1980 at 2095.281 kb on - strand, within HP15_1980 at 2095.351 kb on - strand, within HP15_1980 at 2095.422 kb on - strand, within HP15_1980 at 2095.429 kb on - strand, within HP15_1980 at 2095.468 kb on - strand, within HP15_1980 at 2095.512 kb on - strand, within HP15_1980 at 2095.588 kb on - strand, within HP15_1980 at 2095.617 kb on - strand, within HP15_1980 at 2095.625 kb on + strand, within HP15_1980 at 2095.742 kb on + strand, within HP15_1980 at 2095.825 kb on + strand at 2096.024 kb on + strand, within HP15_1981 at 2096.024 kb on + strand, within HP15_1981 at 2096.092 kb on + strand, within HP15_1981 at 2096.169 kb on + strand, within HP15_1981 at 2096.172 kb on + strand, within HP15_1981 at 2096.771 kb on + strand at 2096.799 kb on - strand at 2096.987 kb on - strand, within HP15_1983 at 2097.050 kb on + strand, within HP15_1983 at 2097.080 kb on + strand, within HP15_1983 at 2097.148 kb on + strand, within HP15_1983 at 2097.174 kb on + strand, within HP15_1983
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,094,979 + +0.6 2,095,016 + +0.5 2,095,044 + +0.0 2,095,090 + -0.6 2,095,158 + HP15_1980 0.16 +0.2 2,095,158 + HP15_1980 0.16 -0.1 2,095,161 - HP15_1980 0.16 -2.2 2,095,166 - HP15_1980 0.17 +0.1 2,095,166 - HP15_1980 0.17 +1.0 2,095,281 - HP15_1980 0.30 +0.6 2,095,351 - HP15_1980 0.38 -1.5 2,095,422 - HP15_1980 0.45 -0.9 2,095,429 - HP15_1980 0.46 -0.5 2,095,468 - HP15_1980 0.51 +0.5 2,095,512 - HP15_1980 0.56 +0.7 2,095,588 - HP15_1980 0.64 +1.1 2,095,617 - HP15_1980 0.67 -1.7 2,095,625 + HP15_1980 0.68 -2.0 2,095,742 + HP15_1980 0.81 +0.8 2,095,825 + -0.8 2,096,024 + HP15_1981 0.20 -1.1 2,096,024 + HP15_1981 0.20 -2.5 2,096,092 + HP15_1981 0.49 +1.1 2,096,169 + HP15_1981 0.81 -4.2 2,096,172 + HP15_1981 0.82 -2.8 2,096,771 + +2.3 2,096,799 - +0.8 2,096,987 - HP15_1983 0.13 -0.7 2,097,050 + HP15_1983 0.22 -0.2 2,097,080 + HP15_1983 0.27 +0.2 2,097,148 + HP15_1983 0.38 -1.5 2,097,174 + HP15_1983 0.42 -2.3
Or see this region's nucleotide sequence