Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1965 and HP15_1966 overlap by 4 nucleotides HP15_1966 and HP15_1967 overlap by 4 nucleotides
HP15_1965: HP15_1965 - phage portal protein, lambda family, at 2,082,382 to 2,083,980
_1965
HP15_1966: HP15_1966 - head-to-tail joining protein W, GpW, at 2,083,977 to 2,084,183
_1966
HP15_1967: HP15_1967 - phage terminase large subunit (GpA), at 2,084,180 to 2,086,012
_1967
Position (kb)
2083
2084
2085 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2083.037 kb on + strand, within HP15_1965 at 2083.054 kb on - strand, within HP15_1965 at 2083.071 kb on + strand, within HP15_1965 at 2083.105 kb on + strand, within HP15_1965 at 2083.185 kb on + strand, within HP15_1965 at 2083.200 kb on + strand, within HP15_1965 at 2083.244 kb on - strand, within HP15_1965 at 2083.297 kb on + strand, within HP15_1965 at 2083.405 kb on - strand, within HP15_1965 at 2083.424 kb on - strand, within HP15_1965 at 2083.460 kb on - strand, within HP15_1965 at 2083.469 kb on + strand, within HP15_1965 at 2083.669 kb on + strand, within HP15_1965 at 2083.677 kb on - strand, within HP15_1965 at 2083.683 kb on - strand, within HP15_1965 at 2083.688 kb on - strand, within HP15_1965 at 2083.695 kb on - strand, within HP15_1965 at 2083.724 kb on + strand, within HP15_1965 at 2083.782 kb on + strand, within HP15_1965 at 2083.782 kb on + strand, within HP15_1965 at 2083.864 kb on - strand at 2083.877 kb on + strand at 2083.897 kb on + strand at 2083.905 kb on - strand at 2084.143 kb on - strand, within HP15_1966 at 2084.265 kb on - strand at 2084.265 kb on - strand at 2084.292 kb on + strand at 2084.331 kb on - strand at 2084.395 kb on - strand, within HP15_1967 at 2084.410 kb on - strand, within HP15_1967 at 2084.430 kb on - strand, within HP15_1967 at 2084.477 kb on + strand, within HP15_1967 at 2084.544 kb on - strand, within HP15_1967 at 2084.580 kb on + strand, within HP15_1967 at 2084.707 kb on - strand, within HP15_1967 at 2084.772 kb on - strand, within HP15_1967 at 2084.818 kb on - strand, within HP15_1967 at 2084.888 kb on - strand, within HP15_1967 at 2085.060 kb on - strand, within HP15_1967 at 2085.072 kb on - strand, within HP15_1967 at 2085.101 kb on - strand, within HP15_1967 at 2085.170 kb on + strand, within HP15_1967 at 2085.170 kb on + strand, within HP15_1967 at 2085.178 kb on - strand, within HP15_1967
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,083,037 + HP15_1965 0.41 -0.4 2,083,054 - HP15_1965 0.42 +0.4 2,083,071 + HP15_1965 0.43 +1.8 2,083,105 + HP15_1965 0.45 -1.3 2,083,185 + HP15_1965 0.50 +0.5 2,083,200 + HP15_1965 0.51 -1.9 2,083,244 - HP15_1965 0.54 +0.0 2,083,297 + HP15_1965 0.57 +0.4 2,083,405 - HP15_1965 0.64 -0.6 2,083,424 - HP15_1965 0.65 -0.0 2,083,460 - HP15_1965 0.67 +0.3 2,083,469 + HP15_1965 0.68 +0.2 2,083,669 + HP15_1965 0.80 -1.5 2,083,677 - HP15_1965 0.81 -1.8 2,083,683 - HP15_1965 0.81 +0.2 2,083,688 - HP15_1965 0.82 +0.6 2,083,695 - HP15_1965 0.82 -0.6 2,083,724 + HP15_1965 0.84 +0.6 2,083,782 + HP15_1965 0.88 -2.5 2,083,782 + HP15_1965 0.88 +0.4 2,083,864 - +0.5 2,083,877 + -1.7 2,083,897 + +0.5 2,083,905 - +2.8 2,084,143 - HP15_1966 0.80 -1.2 2,084,265 - +0.2 2,084,265 - +1.1 2,084,292 + +0.4 2,084,331 - -1.9 2,084,395 - HP15_1967 0.12 +2.0 2,084,410 - HP15_1967 0.13 +0.7 2,084,430 - HP15_1967 0.14 -0.7 2,084,477 + HP15_1967 0.16 -0.8 2,084,544 - HP15_1967 0.20 -1.2 2,084,580 + HP15_1967 0.22 +0.7 2,084,707 - HP15_1967 0.29 +0.5 2,084,772 - HP15_1967 0.32 +0.6 2,084,818 - HP15_1967 0.35 -1.9 2,084,888 - HP15_1967 0.39 -1.4 2,085,060 - HP15_1967 0.48 -1.0 2,085,072 - HP15_1967 0.49 -1.3 2,085,101 - HP15_1967 0.50 +1.9 2,085,170 + HP15_1967 0.54 -2.3 2,085,170 + HP15_1967 0.54 +0.5 2,085,178 - HP15_1967 0.54 -1.3
Or see this region's nucleotide sequence