Strain Fitness in Marinobacter adhaerens HP15 around HP15_1966

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1965 and HP15_1966 overlap by 4 nucleotidesHP15_1966 and HP15_1967 overlap by 4 nucleotides HP15_1965: HP15_1965 - phage portal protein, lambda family, at 2,082,382 to 2,083,980 _1965 HP15_1966: HP15_1966 - head-to-tail joining protein W, GpW, at 2,083,977 to 2,084,183 _1966 HP15_1967: HP15_1967 - phage terminase large subunit (GpA), at 2,084,180 to 2,086,012 _1967 Position (kb) 2083 2084 2085Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2083.037 kb on + strand, within HP15_1965at 2083.054 kb on - strand, within HP15_1965at 2083.071 kb on + strand, within HP15_1965at 2083.105 kb on + strand, within HP15_1965at 2083.185 kb on + strand, within HP15_1965at 2083.200 kb on + strand, within HP15_1965at 2083.244 kb on - strand, within HP15_1965at 2083.297 kb on + strand, within HP15_1965at 2083.405 kb on - strand, within HP15_1965at 2083.424 kb on - strand, within HP15_1965at 2083.460 kb on - strand, within HP15_1965at 2083.469 kb on + strand, within HP15_1965at 2083.669 kb on + strand, within HP15_1965at 2083.677 kb on - strand, within HP15_1965at 2083.683 kb on - strand, within HP15_1965at 2083.688 kb on - strand, within HP15_1965at 2083.695 kb on - strand, within HP15_1965at 2083.724 kb on + strand, within HP15_1965at 2083.782 kb on + strand, within HP15_1965at 2083.782 kb on + strand, within HP15_1965at 2083.864 kb on - strandat 2083.877 kb on + strandat 2083.897 kb on + strandat 2083.905 kb on - strandat 2084.143 kb on - strand, within HP15_1966at 2084.265 kb on - strandat 2084.265 kb on - strandat 2084.292 kb on + strandat 2084.331 kb on - strandat 2084.395 kb on - strand, within HP15_1967at 2084.410 kb on - strand, within HP15_1967at 2084.430 kb on - strand, within HP15_1967at 2084.477 kb on + strand, within HP15_1967at 2084.544 kb on - strand, within HP15_1967at 2084.580 kb on + strand, within HP15_1967at 2084.707 kb on - strand, within HP15_1967at 2084.772 kb on - strand, within HP15_1967at 2084.818 kb on - strand, within HP15_1967at 2084.888 kb on - strand, within HP15_1967at 2085.060 kb on - strand, within HP15_1967at 2085.072 kb on - strand, within HP15_1967at 2085.101 kb on - strand, within HP15_1967at 2085.170 kb on + strand, within HP15_1967at 2085.170 kb on + strand, within HP15_1967at 2085.178 kb on - strand, within HP15_1967

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,083,037 + HP15_1965 0.41 -0.4
2,083,054 - HP15_1965 0.42 +0.4
2,083,071 + HP15_1965 0.43 +1.8
2,083,105 + HP15_1965 0.45 -1.3
2,083,185 + HP15_1965 0.50 +0.5
2,083,200 + HP15_1965 0.51 -1.9
2,083,244 - HP15_1965 0.54 +0.0
2,083,297 + HP15_1965 0.57 +0.4
2,083,405 - HP15_1965 0.64 -0.6
2,083,424 - HP15_1965 0.65 -0.0
2,083,460 - HP15_1965 0.67 +0.3
2,083,469 + HP15_1965 0.68 +0.2
2,083,669 + HP15_1965 0.80 -1.5
2,083,677 - HP15_1965 0.81 -1.8
2,083,683 - HP15_1965 0.81 +0.2
2,083,688 - HP15_1965 0.82 +0.6
2,083,695 - HP15_1965 0.82 -0.6
2,083,724 + HP15_1965 0.84 +0.6
2,083,782 + HP15_1965 0.88 -2.5
2,083,782 + HP15_1965 0.88 +0.4
2,083,864 - +0.5
2,083,877 + -1.7
2,083,897 + +0.5
2,083,905 - +2.8
2,084,143 - HP15_1966 0.80 -1.2
2,084,265 - +0.2
2,084,265 - +1.1
2,084,292 + +0.4
2,084,331 - -1.9
2,084,395 - HP15_1967 0.12 +2.0
2,084,410 - HP15_1967 0.13 +0.7
2,084,430 - HP15_1967 0.14 -0.7
2,084,477 + HP15_1967 0.16 -0.8
2,084,544 - HP15_1967 0.20 -1.2
2,084,580 + HP15_1967 0.22 +0.7
2,084,707 - HP15_1967 0.29 +0.5
2,084,772 - HP15_1967 0.32 +0.6
2,084,818 - HP15_1967 0.35 -1.9
2,084,888 - HP15_1967 0.39 -1.4
2,085,060 - HP15_1967 0.48 -1.0
2,085,072 - HP15_1967 0.49 -1.3
2,085,101 - HP15_1967 0.50 +1.9
2,085,170 + HP15_1967 0.54 -2.3
2,085,170 + HP15_1967 0.54 +0.5
2,085,178 - HP15_1967 0.54 -1.3

Or see this region's nucleotide sequence