Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1795 and HP15_1796 overlap by 8 nucleotides HP15_1796 and HP15_1797 are separated by 74 nucleotides HP15_1797 and HP15_1798 are separated by 20 nucleotides
HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148
_1795
HP15_1796: HP15_1796 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) , at 1,889,141 to 1,889,647
_1796
HP15_1797: HP15_1797 - quinone oxidoreductase, YhdH/YhfP family, at 1,889,722 to 1,890,723
_1797
HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805
_1798
Position (kb)
1889
1890
1891 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1889.200 kb on - strand, within HP15_1796 at 1889.817 kb on - strand at 1889.931 kb on + strand, within HP15_1797 at 1889.939 kb on - strand, within HP15_1797 at 1889.958 kb on - strand, within HP15_1797 at 1890.002 kb on + strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.010 kb on - strand, within HP15_1797 at 1890.161 kb on + strand, within HP15_1797 at 1890.262 kb on - strand, within HP15_1797 at 1890.342 kb on - strand, within HP15_1797 at 1890.382 kb on + strand, within HP15_1797 at 1890.548 kb on + strand, within HP15_1797 at 1890.681 kb on - strand at 1890.689 kb on - strand at 1890.703 kb on - strand at 1890.910 kb on + strand, within HP15_1798 at 1890.959 kb on + strand, within HP15_1798 at 1890.995 kb on - strand, within HP15_1798 at 1891.223 kb on - strand, within HP15_1798 at 1891.311 kb on - strand, within HP15_1798 at 1891.408 kb on + strand, within HP15_1798 at 1891.413 kb on + strand, within HP15_1798 at 1891.445 kb on + strand, within HP15_1798 at 1891.479 kb on + strand, within HP15_1798 at 1891.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,889,200 - HP15_1796 0.12 -1.2 1,889,817 - +0.0 1,889,931 + HP15_1797 0.21 -0.8 1,889,939 - HP15_1797 0.22 +0.0 1,889,958 - HP15_1797 0.24 -0.7 1,890,002 + HP15_1797 0.28 -1.3 1,890,010 - HP15_1797 0.29 -1.0 1,890,010 - HP15_1797 0.29 -0.7 1,890,161 + HP15_1797 0.44 -0.5 1,890,262 - HP15_1797 0.54 +1.0 1,890,342 - HP15_1797 0.62 -0.1 1,890,382 + HP15_1797 0.66 -0.5 1,890,548 + HP15_1797 0.82 -0.0 1,890,681 - +1.8 1,890,689 - +0.9 1,890,703 - -0.7 1,890,910 + HP15_1798 0.16 -1.4 1,890,959 + HP15_1798 0.20 -0.5 1,890,995 - HP15_1798 0.24 -2.9 1,891,223 - HP15_1798 0.45 -2.0 1,891,311 - HP15_1798 0.53 +1.0 1,891,408 + HP15_1798 0.63 -1.0 1,891,413 + HP15_1798 0.63 -0.1 1,891,445 + HP15_1798 0.66 -1.0 1,891,479 + HP15_1798 0.69 -0.5 1,891,704 + -0.3
Or see this region's nucleotide sequence