Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1701 and HP15_1702 are separated by 610 nucleotides HP15_1702 and HP15_1703 are separated by 26 nucleotides HP15_1703 and HP15_1704 are separated by 74 nucleotides
HP15_1701: HP15_1701 - hypothetical protein, at 1,794,678 to 1,795,841
_1701
HP15_1702: HP15_1702 - protein containing DUF785, at 1,796,452 to 1,797,051
_1702
HP15_1703: HP15_1703 - acyl carrier protein phosphodiesterase, at 1,797,078 to 1,797,602
_1703
HP15_1704: HP15_1704 - conserved hypothetical protein, secreted, at 1,797,677 to 1,798,219
_1704
Position (kb)
1796
1797
1798 Strain fitness (log2 ratio)
-2
-1
0
1 at 1795.488 kb on - strand, within HP15_1701 at 1795.757 kb on - strand at 1795.781 kb on - strand at 1795.805 kb on - strand at 1795.820 kb on - strand at 1795.910 kb on + strand at 1795.945 kb on - strand at 1795.956 kb on + strand at 1796.062 kb on + strand at 1796.072 kb on + strand at 1796.081 kb on + strand at 1796.406 kb on - strand at 1796.972 kb on - strand, within HP15_1702 at 1796.972 kb on - strand, within HP15_1702 at 1797.216 kb on + strand, within HP15_1703 at 1797.261 kb on - strand, within HP15_1703 at 1797.465 kb on - strand, within HP15_1703 at 1797.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,795,488 - HP15_1701 0.70 +0.2 1,795,757 - -0.5 1,795,781 - +0.0 1,795,805 - -1.6 1,795,820 - +0.9 1,795,910 + -1.1 1,795,945 - +1.5 1,795,956 + +0.9 1,796,062 + -0.7 1,796,072 + +0.1 1,796,081 + -0.3 1,796,406 - +0.2 1,796,972 - HP15_1702 0.87 -1.5 1,796,972 - HP15_1702 0.87 -2.5 1,797,216 + HP15_1703 0.26 -0.2 1,797,261 - HP15_1703 0.35 +1.2 1,797,465 - HP15_1703 0.74 +0.3 1,797,614 - -0.5
Or see this region's nucleotide sequence