Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1694 and HP15_1695 are separated by 110 nucleotides HP15_1695 and HP15_1696 are separated by 183 nucleotides HP15_1696 and HP15_1697 are separated by 2 nucleotides
HP15_1694: HP15_1694 - conserved hypothetical protein, at 1,783,983 to 1,785,311
_1694
HP15_1695: HP15_1695 - protein containing zinc finger, DksA/TraR C4-type domain, at 1,785,422 to 1,785,688
_1695
HP15_1696: HP15_1696 - transcriptional regulator, MerR family, at 1,785,872 to 1,786,288
_1696
HP15_1697: HP15_1697 - conserved hypothetical protein, at 1,786,291 to 1,787,217
_1697
Position (kb)
1785
1786 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1784.520 kb on + strand, within HP15_1694 at 1784.527 kb on - strand, within HP15_1694 at 1784.567 kb on + strand, within HP15_1694 at 1784.643 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.653 kb on + strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.661 kb on - strand, within HP15_1694 at 1784.714 kb on - strand, within HP15_1694 at 1784.791 kb on + strand, within HP15_1694 at 1784.797 kb on - strand, within HP15_1694 at 1785.108 kb on + strand, within HP15_1694 at 1785.119 kb on + strand, within HP15_1694 at 1785.202 kb on + strand at 1785.507 kb on + strand, within HP15_1695 at 1785.516 kb on - strand, within HP15_1695 at 1785.688 kb on + strand at 1786.023 kb on - strand, within HP15_1696 at 1786.057 kb on + strand, within HP15_1696 at 1786.065 kb on - strand, within HP15_1696 at 1786.198 kb on - strand, within HP15_1696 at 1786.274 kb on - strand at 1786.289 kb on + strand at 1786.295 kb on - strand at 1786.295 kb on - strand at 1786.385 kb on - strand, within HP15_1697 at 1786.417 kb on - strand, within HP15_1697 at 1786.449 kb on - strand, within HP15_1697 at 1786.511 kb on + strand, within HP15_1697 at 1786.545 kb on - strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.614 kb on + strand, within HP15_1697 at 1786.622 kb on - strand, within HP15_1697 at 1786.682 kb on - strand, within HP15_1697
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,784,520 + HP15_1694 0.40 +2.2 1,784,527 - HP15_1694 0.41 -0.8 1,784,567 + HP15_1694 0.44 -0.4 1,784,643 + HP15_1694 0.50 +1.0 1,784,653 + HP15_1694 0.50 -0.5 1,784,653 + HP15_1694 0.50 -2.6 1,784,661 - HP15_1694 0.51 -2.1 1,784,661 - HP15_1694 0.51 +0.0 1,784,714 - HP15_1694 0.55 +1.3 1,784,791 + HP15_1694 0.61 -0.7 1,784,797 - HP15_1694 0.61 -0.9 1,785,108 + HP15_1694 0.85 +0.2 1,785,119 + HP15_1694 0.85 +0.3 1,785,202 + -2.7 1,785,507 + HP15_1695 0.32 -2.0 1,785,516 - HP15_1695 0.35 -0.5 1,785,688 + -2.3 1,786,023 - HP15_1696 0.36 +0.9 1,786,057 + HP15_1696 0.44 +0.8 1,786,065 - HP15_1696 0.46 +0.4 1,786,198 - HP15_1696 0.78 +0.2 1,786,274 - +0.2 1,786,289 + +0.4 1,786,295 - -0.0 1,786,295 - -0.1 1,786,385 - HP15_1697 0.10 -3.3 1,786,417 - HP15_1697 0.14 +0.1 1,786,449 - HP15_1697 0.17 +0.4 1,786,511 + HP15_1697 0.24 -0.8 1,786,545 - HP15_1697 0.27 -0.8 1,786,614 + HP15_1697 0.35 -0.1 1,786,614 + HP15_1697 0.35 +0.1 1,786,614 + HP15_1697 0.35 +0.3 1,786,622 - HP15_1697 0.36 +0.1 1,786,682 - HP15_1697 0.42 -0.5
Or see this region's nucleotide sequence