Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1680 and HP15_1681 are separated by 561 nucleotides HP15_1681 and HP15_1682 are separated by 48 nucleotides HP15_1682 and HP15_1683 are separated by 229 nucleotides HP15_1683 and HP15_1684 are separated by 31 nucleotides
HP15_1680: HP15_1680 - transcriptional regulator, LysR family protein, at 1,767,980 to 1,768,891
_1680
HP15_1681: HP15_1681 - hypothetical protein, at 1,769,453 to 1,769,599
_1681
HP15_1682: HP15_1682 - hypothetical protein, at 1,769,648 to 1,769,761
_1682
HP15_1683: HP15_1683 - integron gene cassette protein, at 1,769,991 to 1,770,353
_1683
HP15_1684: HP15_1684 - conserved hypothetical protein, secreted, at 1,770,385 to 1,770,783
_1684
Position (kb)
1769
1770 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1768.684 kb on - strand, within HP15_1680 at 1768.717 kb on + strand, within HP15_1680 at 1768.796 kb on - strand, within HP15_1680 at 1768.881 kb on + strand at 1768.895 kb on + strand at 1768.928 kb on + strand at 1768.928 kb on + strand at 1768.936 kb on - strand at 1769.061 kb on - strand at 1769.357 kb on + strand at 1769.364 kb on + strand at 1769.372 kb on - strand at 1769.437 kb on + strand at 1769.454 kb on + strand at 1769.490 kb on + strand, within HP15_1681 at 1769.490 kb on + strand, within HP15_1681 at 1769.525 kb on + strand, within HP15_1681 at 1769.526 kb on + strand, within HP15_1681 at 1769.541 kb on + strand, within HP15_1681 at 1769.550 kb on - strand, within HP15_1681 at 1769.592 kb on + strand at 1769.641 kb on - strand at 1769.767 kb on + strand at 1769.804 kb on - strand at 1769.806 kb on - strand at 1769.830 kb on - strand at 1769.869 kb on + strand at 1769.919 kb on + strand at 1769.927 kb on - strand at 1769.927 kb on - strand at 1769.930 kb on - strand at 1770.136 kb on + strand, within HP15_1683 at 1770.138 kb on - strand, within HP15_1683 at 1770.197 kb on + strand, within HP15_1683 at 1770.255 kb on + strand, within HP15_1683 at 1770.308 kb on + strand, within HP15_1683 at 1770.316 kb on - strand, within HP15_1683 at 1770.331 kb on - strand at 1770.331 kb on - strand at 1770.396 kb on - strand at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.467 kb on + strand, within HP15_1684 at 1770.614 kb on - strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.662 kb on + strand, within HP15_1684 at 1770.664 kb on + strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.670 kb on - strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.687 kb on + strand, within HP15_1684 at 1770.700 kb on - strand, within HP15_1684
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,768,684 - HP15_1680 0.77 +0.5 1,768,717 + HP15_1680 0.81 -4.0 1,768,796 - HP15_1680 0.89 -2.2 1,768,881 + +0.5 1,768,895 + -0.1 1,768,928 + -0.2 1,768,928 + -1.3 1,768,936 - -2.7 1,769,061 - +1.0 1,769,357 + -1.5 1,769,364 + -2.2 1,769,372 - +0.8 1,769,437 + +0.8 1,769,454 + -1.2 1,769,490 + HP15_1681 0.25 -0.9 1,769,490 + HP15_1681 0.25 -1.2 1,769,525 + HP15_1681 0.49 -0.4 1,769,526 + HP15_1681 0.50 +2.7 1,769,541 + HP15_1681 0.60 -3.5 1,769,550 - HP15_1681 0.66 -0.5 1,769,592 + +1.0 1,769,641 - -0.4 1,769,767 + +0.7 1,769,804 - +0.6 1,769,806 - -0.5 1,769,830 - +0.6 1,769,869 + -0.6 1,769,919 + -0.2 1,769,927 - -4.2 1,769,927 - +1.0 1,769,930 - -0.6 1,770,136 + HP15_1683 0.40 -0.1 1,770,138 - HP15_1683 0.40 -0.7 1,770,197 + HP15_1683 0.57 -0.6 1,770,255 + HP15_1683 0.73 -1.0 1,770,308 + HP15_1683 0.87 -1.4 1,770,316 - HP15_1683 0.90 -1.2 1,770,331 - -0.2 1,770,331 - -1.2 1,770,396 - -0.5 1,770,467 + HP15_1684 0.21 +0.3 1,770,467 + HP15_1684 0.21 +1.2 1,770,467 + HP15_1684 0.21 -0.4 1,770,614 - HP15_1684 0.57 -3.8 1,770,662 + HP15_1684 0.69 +1.2 1,770,662 + HP15_1684 0.69 +0.3 1,770,662 + HP15_1684 0.69 -0.1 1,770,664 + HP15_1684 0.70 +0.1 1,770,670 - HP15_1684 0.71 -0.6 1,770,670 - HP15_1684 0.71 +0.2 1,770,670 - HP15_1684 0.71 +0.2 1,770,687 + HP15_1684 0.76 +0.7 1,770,687 + HP15_1684 0.76 -2.8 1,770,700 - HP15_1684 0.79 +0.3
Or see this region's nucleotide sequence