Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1630 and HP15_1631 are separated by 9 nucleotides HP15_1631 and HP15_1632 are separated by 5 nucleotides HP15_1632 and HP15_1633 are separated by 26 nucleotides
HP15_1630: HP15_1630 - serine/threonine protein kinase, at 1,728,849 to 1,730,693
_1630
HP15_1631: HP15_1631 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) , at 1,730,703 to 1,731,839
_1631
HP15_1632: HP15_1632 - protein containing biotin/lipoyl attachment domain, at 1,731,845 to 1,732,300
_1632
HP15_1633: HP15_1633 - 2-oxoisovalerate dehydrogenase, E1 component, beta subunit, at 1,732,327 to 1,733,304
_1633
Position (kb)
1730
1731
1732 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1729.728 kb on - strand, within HP15_1630 at 1729.896 kb on + strand, within HP15_1630 at 1730.045 kb on + strand, within HP15_1630 at 1730.080 kb on + strand, within HP15_1630 at 1730.266 kb on + strand, within HP15_1630 at 1730.404 kb on - strand, within HP15_1630 at 1730.435 kb on - strand, within HP15_1630 at 1730.531 kb on - strand at 1730.582 kb on - strand at 1730.629 kb on - strand at 1730.649 kb on + strand at 1730.718 kb on - strand at 1730.926 kb on + strand, within HP15_1631 at 1730.982 kb on - strand, within HP15_1631 at 1731.078 kb on + strand, within HP15_1631 at 1731.239 kb on + strand, within HP15_1631 at 1731.391 kb on + strand, within HP15_1631 at 1731.399 kb on - strand, within HP15_1631 at 1731.436 kb on + strand, within HP15_1631 at 1731.488 kb on + strand, within HP15_1631 at 1731.602 kb on + strand, within HP15_1631 at 1731.602 kb on + strand, within HP15_1631 at 1731.612 kb on + strand, within HP15_1631 at 1731.770 kb on + strand at 1731.799 kb on + strand at 1732.058 kb on + strand, within HP15_1632 at 1732.293 kb on - strand at 1732.308 kb on + strand at 1732.308 kb on + strand at 1732.308 kb on + strand at 1732.315 kb on + strand at 1732.316 kb on - strand at 1732.323 kb on - strand at 1732.369 kb on - strand at 1732.417 kb on - strand at 1732.549 kb on - strand, within HP15_1633 at 1732.675 kb on + strand, within HP15_1633 at 1732.690 kb on + strand, within HP15_1633 at 1732.744 kb on + strand, within HP15_1633 at 1732.818 kb on - strand, within HP15_1633
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,729,728 - HP15_1630 0.48 -2.4 1,729,896 + HP15_1630 0.57 -1.1 1,730,045 + HP15_1630 0.65 -2.9 1,730,080 + HP15_1630 0.67 -2.7 1,730,266 + HP15_1630 0.77 -0.5 1,730,404 - HP15_1630 0.84 -0.2 1,730,435 - HP15_1630 0.86 +1.1 1,730,531 - -0.1 1,730,582 - -0.1 1,730,629 - +0.1 1,730,649 + +1.5 1,730,718 - -1.1 1,730,926 + HP15_1631 0.20 +1.7 1,730,982 - HP15_1631 0.25 -2.2 1,731,078 + HP15_1631 0.33 -2.9 1,731,239 + HP15_1631 0.47 -0.0 1,731,391 + HP15_1631 0.61 +0.1 1,731,399 - HP15_1631 0.61 -1.0 1,731,436 + HP15_1631 0.64 -0.0 1,731,488 + HP15_1631 0.69 -2.9 1,731,602 + HP15_1631 0.79 -0.0 1,731,602 + HP15_1631 0.79 -1.4 1,731,612 + HP15_1631 0.80 -2.0 1,731,770 + +2.3 1,731,799 + +0.2 1,732,058 + HP15_1632 0.47 -1.7 1,732,293 - -0.5 1,732,308 + -0.3 1,732,308 + +3.3 1,732,308 + +0.9 1,732,315 + +0.1 1,732,316 - +0.8 1,732,323 - -0.8 1,732,369 - +0.5 1,732,417 - -0.1 1,732,549 - HP15_1633 0.23 -0.4 1,732,675 + HP15_1633 0.36 -1.1 1,732,690 + HP15_1633 0.37 +1.5 1,732,744 + HP15_1633 0.43 +0.6 1,732,818 - HP15_1633 0.50 +2.0
Or see this region's nucleotide sequence