Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1528 and HP15_1529 are separated by 42 nucleotides HP15_1529 and HP15_1530 are separated by 39 nucleotides HP15_1530 and HP15_1531 are separated by 3 nucleotides
HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886
_1528
HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567
_1529
HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590
_1530
HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520
_1531
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1610.798 kb on + strand, within HP15_1528 at 1610.808 kb on + strand at 1610.946 kb on + strand at 1611.074 kb on - strand, within HP15_1529 at 1611.316 kb on + strand, within HP15_1529 at 1611.366 kb on - strand, within HP15_1529 at 1611.643 kb on + strand at 1611.676 kb on - strand at 1611.853 kb on + strand, within HP15_1530 at 1611.853 kb on + strand, within HP15_1530 at 1611.911 kb on + strand, within HP15_1530 at 1612.092 kb on - strand, within HP15_1530 at 1612.587 kb on - strand at 1612.587 kb on - strand at 1612.624 kb on + strand at 1612.624 kb on + strand at 1612.630 kb on + strand at 1612.638 kb on - strand at 1612.678 kb on + strand at 1612.791 kb on + strand, within HP15_1531 at 1612.812 kb on + strand, within HP15_1531 at 1612.932 kb on + strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1613.205 kb on + strand, within HP15_1531 at 1613.247 kb on + strand, within HP15_1531 at 1613.264 kb on - strand, within HP15_1531 at 1613.266 kb on + strand, within HP15_1531 at 1613.357 kb on - strand, within HP15_1531
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,610,798 + HP15_1528 0.89 +0.1 1,610,808 + +0.9 1,610,946 + -0.4 1,611,074 - HP15_1529 0.23 +3.4 1,611,316 + HP15_1529 0.61 -1.1 1,611,366 - HP15_1529 0.68 -0.5 1,611,643 + -2.1 1,611,676 - -0.8 1,611,853 + HP15_1530 0.25 -0.3 1,611,853 + HP15_1530 0.25 -2.1 1,611,911 + HP15_1530 0.31 -5.2 1,612,092 - HP15_1530 0.49 -1.0 1,612,587 - +1.7 1,612,587 - +0.3 1,612,624 + -2.9 1,612,624 + -0.7 1,612,630 + +1.5 1,612,638 - +1.4 1,612,678 + -0.9 1,612,791 + HP15_1531 0.21 +0.7 1,612,812 + HP15_1531 0.24 +0.7 1,612,932 + HP15_1531 0.36 -2.1 1,612,966 - HP15_1531 0.40 -0.6 1,612,966 - HP15_1531 0.40 +1.1 1,612,966 - HP15_1531 0.40 +0.8 1,613,205 + HP15_1531 0.66 +0.4 1,613,247 + HP15_1531 0.70 -0.1 1,613,264 - HP15_1531 0.72 +0.8 1,613,266 + HP15_1531 0.72 +0.0 1,613,357 - HP15_1531 0.82 +0.0
Or see this region's nucleotide sequence