Strain Fitness in Marinobacter adhaerens HP15 around HP15_1492

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1490 and HP15_1491 are separated by 74 nucleotidesHP15_1491 and HP15_1492 overlap by 11 nucleotidesHP15_1492 and HP15_1493 are separated by 35 nucleotides HP15_1490: HP15_1490 - conserved hypothetical protein, at 1,564,640 to 1,565,752 _1490 HP15_1491: HP15_1491 - type IV pilus biogenesis protein PilF, at 1,565,827 to 1,566,600 _1491 HP15_1492: HP15_1492 - conserved hypothetical protein, at 1,566,590 to 1,567,627 _1492 HP15_1493: HP15_1493 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 1,567,663 to 1,568,781 _1493 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -1 0 1 2at 1565.791 kb on + strandat 1565.951 kb on + strand, within HP15_1491at 1565.956 kb on + strand, within HP15_1491at 1567.099 kb on + strand, within HP15_1492

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,565,791 + -0.4
1,565,951 + HP15_1491 0.16 -0.1
1,565,956 + HP15_1491 0.17 +2.2
1,567,099 + HP15_1492 0.49 -0.9

Or see this region's nucleotide sequence