Strain Fitness in Marinobacter adhaerens HP15 around HP15_1468

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1466 and HP15_1467 are separated by 217 nucleotidesHP15_1467 and HP15_1468 are separated by 34 nucleotidesHP15_1468 and HP15_1469 are separated by 18 nucleotidesHP15_1469 and HP15_1470 are separated by 27 nucleotides HP15_1466: HP15_1466 - nitroreductase family protein, at 1,541,800 to 1,542,351 _1466 HP15_1467: HP15_1467 - fFlagellar basal-body rod protein FlgB, at 1,542,569 to 1,542,988 _1467 HP15_1468: HP15_1468 - flagellar basal-body rod protein FlgC-like protein, at 1,543,023 to 1,543,472 _1468 HP15_1469: HP15_1469 - flagellar hook capping protein, at 1,543,491 to 1,544,168 _1469 HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094 _1470 Position (kb) 1543 1544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1542.066 kb on - strand, within HP15_1466at 1542.092 kb on - strand, within HP15_1466at 1542.094 kb on + strand, within HP15_1466at 1542.161 kb on + strand, within HP15_1466at 1542.161 kb on + strand, within HP15_1466at 1542.208 kb on + strand, within HP15_1466at 1542.208 kb on + strand, within HP15_1466at 1542.240 kb on - strand, within HP15_1466at 1542.317 kb on - strandat 1542.403 kb on + strandat 1542.413 kb on + strandat 1542.519 kb on + strandat 1542.546 kb on + strandat 1542.574 kb on - strandat 1542.635 kb on + strand, within HP15_1467at 1542.892 kb on + strand, within HP15_1467at 1542.905 kb on - strand, within HP15_1467at 1542.971 kb on + strandat 1542.995 kb on + strandat 1543.085 kb on + strand, within HP15_1468at 1543.142 kb on + strand, within HP15_1468at 1543.269 kb on - strand, within HP15_1468at 1543.284 kb on + strand, within HP15_1468at 1543.304 kb on + strand, within HP15_1468at 1543.433 kb on + strandat 1543.464 kb on - strandat 1543.578 kb on - strand, within HP15_1469at 1543.679 kb on + strand, within HP15_1469at 1543.687 kb on + strand, within HP15_1469at 1543.687 kb on - strand, within HP15_1469at 1543.687 kb on - strand, within HP15_1469at 1543.737 kb on - strand, within HP15_1469at 1543.739 kb on + strand, within HP15_1469at 1543.885 kb on - strand, within HP15_1469at 1544.078 kb on - strand, within HP15_1469at 1544.088 kb on - strand, within HP15_1469at 1544.194 kb on - strandat 1544.281 kb on - strandat 1544.281 kb on - strandat 1544.360 kb on - strandat 1544.383 kb on + strandat 1544.395 kb on + strand, within HP15_1470at 1544.395 kb on + strand, within HP15_1470at 1544.403 kb on - strand, within HP15_1470at 1544.403 kb on - strand, within HP15_1470at 1544.430 kb on + strand, within HP15_1470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,542,066 - HP15_1466 0.48 -0.1
1,542,092 - HP15_1466 0.53 +0.8
1,542,094 + HP15_1466 0.53 +0.3
1,542,161 + HP15_1466 0.65 +0.3
1,542,161 + HP15_1466 0.65 -0.7
1,542,208 + HP15_1466 0.74 +0.5
1,542,208 + HP15_1466 0.74 -0.1
1,542,240 - HP15_1466 0.80 +0.4
1,542,317 - -1.1
1,542,403 + +1.9
1,542,413 + +1.4
1,542,519 + +0.9
1,542,546 + -1.6
1,542,574 - +1.3
1,542,635 + HP15_1467 0.16 -0.8
1,542,892 + HP15_1467 0.77 -0.3
1,542,905 - HP15_1467 0.80 -0.8
1,542,971 + -1.1
1,542,995 + +1.4
1,543,085 + HP15_1468 0.14 -0.5
1,543,142 + HP15_1468 0.26 +1.4
1,543,269 - HP15_1468 0.55 -2.8
1,543,284 + HP15_1468 0.58 -0.6
1,543,304 + HP15_1468 0.62 -2.1
1,543,433 + +0.3
1,543,464 - -0.7
1,543,578 - HP15_1469 0.13 -1.7
1,543,679 + HP15_1469 0.28 -2.3
1,543,687 + HP15_1469 0.29 -0.9
1,543,687 - HP15_1469 0.29 -0.4
1,543,687 - HP15_1469 0.29 -3.5
1,543,737 - HP15_1469 0.36 +0.5
1,543,739 + HP15_1469 0.37 -0.3
1,543,885 - HP15_1469 0.58 -0.3
1,544,078 - HP15_1469 0.87 +0.1
1,544,088 - HP15_1469 0.88 -0.4
1,544,194 - -0.9
1,544,281 - -0.7
1,544,281 - -0.6
1,544,360 - -1.1
1,544,383 + -1.2
1,544,395 + HP15_1470 0.10 -0.3
1,544,395 + HP15_1470 0.10 +0.8
1,544,403 - HP15_1470 0.11 -0.2
1,544,403 - HP15_1470 0.11 -0.0
1,544,430 + HP15_1470 0.12 -1.7

Or see this region's nucleotide sequence