Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1466 and HP15_1467 are separated by 217 nucleotides HP15_1467 and HP15_1468 are separated by 34 nucleotides HP15_1468 and HP15_1469 are separated by 18 nucleotides HP15_1469 and HP15_1470 are separated by 27 nucleotides
HP15_1466: HP15_1466 - nitroreductase family protein, at 1,541,800 to 1,542,351
_1466
HP15_1467: HP15_1467 - fFlagellar basal-body rod protein FlgB, at 1,542,569 to 1,542,988
_1467
HP15_1468: HP15_1468 - flagellar basal-body rod protein FlgC-like protein, at 1,543,023 to 1,543,472
_1468
HP15_1469: HP15_1469 - flagellar hook capping protein, at 1,543,491 to 1,544,168
_1469
HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094
_1470
Position (kb)
1543
1544 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1542.066 kb on - strand, within HP15_1466 at 1542.092 kb on - strand, within HP15_1466 at 1542.094 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.161 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.208 kb on + strand, within HP15_1466 at 1542.240 kb on - strand, within HP15_1466 at 1542.317 kb on - strand at 1542.403 kb on + strand at 1542.413 kb on + strand at 1542.519 kb on + strand at 1542.546 kb on + strand at 1542.574 kb on - strand at 1542.635 kb on + strand, within HP15_1467 at 1542.892 kb on + strand, within HP15_1467 at 1542.905 kb on - strand, within HP15_1467 at 1542.971 kb on + strand at 1542.995 kb on + strand at 1543.085 kb on + strand, within HP15_1468 at 1543.142 kb on + strand, within HP15_1468 at 1543.269 kb on - strand, within HP15_1468 at 1543.284 kb on + strand, within HP15_1468 at 1543.304 kb on + strand, within HP15_1468 at 1543.433 kb on + strand at 1543.464 kb on - strand at 1543.578 kb on - strand, within HP15_1469 at 1543.679 kb on + strand, within HP15_1469 at 1543.687 kb on + strand, within HP15_1469 at 1543.687 kb on - strand, within HP15_1469 at 1543.687 kb on - strand, within HP15_1469 at 1543.737 kb on - strand, within HP15_1469 at 1543.739 kb on + strand, within HP15_1469 at 1543.885 kb on - strand, within HP15_1469 at 1544.078 kb on - strand, within HP15_1469 at 1544.088 kb on - strand, within HP15_1469 at 1544.194 kb on - strand at 1544.281 kb on - strand at 1544.281 kb on - strand at 1544.360 kb on - strand at 1544.383 kb on + strand at 1544.395 kb on + strand, within HP15_1470 at 1544.395 kb on + strand, within HP15_1470 at 1544.403 kb on - strand, within HP15_1470 at 1544.403 kb on - strand, within HP15_1470 at 1544.430 kb on + strand, within HP15_1470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,542,066 - HP15_1466 0.48 -0.1 1,542,092 - HP15_1466 0.53 +0.8 1,542,094 + HP15_1466 0.53 +0.3 1,542,161 + HP15_1466 0.65 +0.3 1,542,161 + HP15_1466 0.65 -0.7 1,542,208 + HP15_1466 0.74 +0.5 1,542,208 + HP15_1466 0.74 -0.1 1,542,240 - HP15_1466 0.80 +0.4 1,542,317 - -1.1 1,542,403 + +1.9 1,542,413 + +1.4 1,542,519 + +0.9 1,542,546 + -1.6 1,542,574 - +1.3 1,542,635 + HP15_1467 0.16 -0.8 1,542,892 + HP15_1467 0.77 -0.3 1,542,905 - HP15_1467 0.80 -0.8 1,542,971 + -1.1 1,542,995 + +1.4 1,543,085 + HP15_1468 0.14 -0.5 1,543,142 + HP15_1468 0.26 +1.4 1,543,269 - HP15_1468 0.55 -2.8 1,543,284 + HP15_1468 0.58 -0.6 1,543,304 + HP15_1468 0.62 -2.1 1,543,433 + +0.3 1,543,464 - -0.7 1,543,578 - HP15_1469 0.13 -1.7 1,543,679 + HP15_1469 0.28 -2.3 1,543,687 + HP15_1469 0.29 -0.9 1,543,687 - HP15_1469 0.29 -0.4 1,543,687 - HP15_1469 0.29 -3.5 1,543,737 - HP15_1469 0.36 +0.5 1,543,739 + HP15_1469 0.37 -0.3 1,543,885 - HP15_1469 0.58 -0.3 1,544,078 - HP15_1469 0.87 +0.1 1,544,088 - HP15_1469 0.88 -0.4 1,544,194 - -0.9 1,544,281 - -0.7 1,544,281 - -0.6 1,544,360 - -1.1 1,544,383 + -1.2 1,544,395 + HP15_1470 0.10 -0.3 1,544,395 + HP15_1470 0.10 +0.8 1,544,403 - HP15_1470 0.11 -0.2 1,544,403 - HP15_1470 0.11 -0.0 1,544,430 + HP15_1470 0.12 -1.7
Or see this region's nucleotide sequence