Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1296 and HP15_1297 overlap by 4 nucleotides HP15_1297 and HP15_1298 are separated by 72 nucleotides HP15_1298 and HP15_1299 overlap by 4 nucleotides
HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803
_1296
HP15_1297: HP15_1297 - conserved hypothetical protein, secreted, at 1,357,800 to 1,358,552
_1297
HP15_1298: HP15_1298 - phosphoribosylglycinamide formyltransferase, at 1,358,625 to 1,359,287
_1298
HP15_1299: HP15_1299 - phosphoribosylaminoimidazole synthetase, at 1,359,284 to 1,360,414
_1299
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1356.973 kb on + strand, within HP15_1296 at 1356.978 kb on + strand, within HP15_1296 at 1356.981 kb on - strand, within HP15_1296 at 1356.986 kb on - strand, within HP15_1296 at 1357.531 kb on + strand, within HP15_1296 at 1357.534 kb on - strand, within HP15_1296 at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.764 kb on + strand at 1357.772 kb on - strand at 1357.772 kb on - strand at 1357.772 kb on - strand at 1357.804 kb on + strand at 1358.248 kb on + strand, within HP15_1297 at 1358.256 kb on - strand, within HP15_1297 at 1358.338 kb on + strand, within HP15_1297 at 1358.599 kb on - strand at 1358.733 kb on - strand, within HP15_1298 at 1358.902 kb on + strand, within HP15_1298 at 1358.939 kb on + strand, within HP15_1298 at 1359.112 kb on + strand, within HP15_1298 at 1359.150 kb on + strand, within HP15_1298 at 1359.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,356,973 + HP15_1296 0.35 +0.8 1,356,978 + HP15_1296 0.35 +0.0 1,356,981 - HP15_1296 0.36 +0.2 1,356,986 - HP15_1296 0.36 -0.8 1,357,531 + HP15_1296 0.79 -1.0 1,357,534 - HP15_1296 0.79 +0.3 1,357,764 + -1.3 1,357,764 + -2.3 1,357,764 + -1.6 1,357,764 + -3.1 1,357,772 - +0.6 1,357,772 - -0.4 1,357,772 - -0.4 1,357,804 + -0.4 1,358,248 + HP15_1297 0.59 +0.0 1,358,256 - HP15_1297 0.61 -1.8 1,358,338 + HP15_1297 0.71 -3.6 1,358,599 - +1.6 1,358,733 - HP15_1298 0.16 -2.0 1,358,902 + HP15_1298 0.42 -2.0 1,358,939 + HP15_1298 0.47 -2.1 1,359,112 + HP15_1298 0.73 -0.6 1,359,150 + HP15_1298 0.79 -1.3 1,359,278 - +0.0
Or see this region's nucleotide sequence