Strain Fitness in Marinobacter adhaerens HP15 around HP15_130

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_129 and HP15_130 are separated by 104 nucleotidesHP15_130 and HP15_131 are separated by 71 nucleotides HP15_129: HP15_129 - RecT protein, at 135,718 to 136,674 _129 HP15_130: HP15_130 - conserved hypothetical protein, at 136,779 to 137,042 _130 HP15_131: HP15_131 - endonuclease-like phage-related protein, at 137,114 to 138,118 _131 Position (kb) 136 137 138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 135.851 kb on + strand, within HP15_129at 135.909 kb on - strand, within HP15_129at 135.993 kb on + strand, within HP15_129at 136.067 kb on - strand, within HP15_129at 136.129 kb on + strand, within HP15_129at 136.148 kb on + strand, within HP15_129at 136.404 kb on + strand, within HP15_129at 136.409 kb on + strand, within HP15_129at 136.501 kb on + strand, within HP15_129at 136.501 kb on - strand, within HP15_129at 136.506 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.509 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.511 kb on - strand, within HP15_129at 136.600 kb on + strandat 136.605 kb on + strandat 136.613 kb on - strandat 136.615 kb on - strandat 136.626 kb on + strandat 136.646 kb on - strandat 136.651 kb on - strandat 136.656 kb on - strandat 136.676 kb on + strandat 136.693 kb on - strandat 136.706 kb on - strandat 136.803 kb on - strandat 136.814 kb on + strand, within HP15_130at 136.860 kb on + strand, within HP15_130at 136.865 kb on - strand, within HP15_130at 136.981 kb on + strand, within HP15_130at 136.991 kb on + strand, within HP15_130at 136.999 kb on - strand, within HP15_130at 137.009 kb on - strand, within HP15_130at 137.027 kb on + strandat 137.029 kb on + strandat 137.035 kb on - strandat 137.038 kb on + strandat 137.095 kb on - strandat 137.096 kb on + strandat 137.130 kb on + strandat 137.169 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.208 kb on + strandat 137.216 kb on - strand, within HP15_131at 137.216 kb on - strand, within HP15_131at 137.274 kb on - strand, within HP15_131at 137.289 kb on - strand, within HP15_131at 137.299 kb on + strand, within HP15_131at 137.423 kb on + strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.472 kb on - strand, within HP15_131at 137.523 kb on - strand, within HP15_131at 137.536 kb on + strand, within HP15_131at 137.539 kb on - strand, within HP15_131at 137.591 kb on + strand, within HP15_131at 137.631 kb on + strand, within HP15_131at 137.683 kb on + strand, within HP15_131at 137.691 kb on - strand, within HP15_131at 137.691 kb on - strand, within HP15_131at 137.735 kb on - strand, within HP15_131at 137.787 kb on - strand, within HP15_131at 137.803 kb on + strand, within HP15_131at 137.811 kb on - strand, within HP15_131at 137.832 kb on - strand, within HP15_131at 137.883 kb on - strand, within HP15_131at 137.893 kb on - strand, within HP15_131at 137.908 kb on - strand, within HP15_131at 137.963 kb on + strand, within HP15_131at 137.968 kb on + strand, within HP15_131at 137.976 kb on + strand, within HP15_131

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
135,851 + HP15_129 0.14 -1.4
135,909 - HP15_129 0.20 -1.2
135,993 + HP15_129 0.29 +0.8
136,067 - HP15_129 0.36 -0.3
136,129 + HP15_129 0.43 +0.3
136,148 + HP15_129 0.45 -0.0
136,404 + HP15_129 0.72 +0.4
136,409 + HP15_129 0.72 +0.5
136,501 + HP15_129 0.82 -1.5
136,501 - HP15_129 0.82 +0.0
136,506 - HP15_129 0.82 -2.4
136,509 - HP15_129 0.83 -0.3
136,509 - HP15_129 0.83 -0.1
136,511 - HP15_129 0.83 -1.0
136,511 - HP15_129 0.83 -0.9
136,511 - HP15_129 0.83 -1.4
136,600 + +2.0
136,605 + -3.8
136,613 - -0.4
136,615 - -1.5
136,626 + -0.7
136,646 - +0.2
136,651 - +0.5
136,656 - +0.0
136,676 + +0.7
136,693 - -0.3
136,706 - +0.2
136,803 - -1.1
136,814 + HP15_130 0.13 +0.3
136,860 + HP15_130 0.31 +0.9
136,865 - HP15_130 0.33 -2.4
136,981 + HP15_130 0.77 +0.2
136,991 + HP15_130 0.80 +1.7
136,999 - HP15_130 0.83 +0.3
137,009 - HP15_130 0.87 -2.1
137,027 + +0.3
137,029 + +1.9
137,035 - -0.5
137,038 + +0.4
137,095 - +1.2
137,096 + -1.0
137,130 + -0.8
137,169 + -0.5
137,208 + +0.2
137,208 + -0.4
137,208 + -0.6
137,208 + +0.8
137,208 + +1.2
137,208 + -1.7
137,216 - HP15_131 0.10 +0.6
137,216 - HP15_131 0.10 -0.4
137,274 - HP15_131 0.16 +0.3
137,289 - HP15_131 0.17 +0.8
137,299 + HP15_131 0.18 -3.3
137,423 + HP15_131 0.31 +0.3
137,472 - HP15_131 0.36 -0.5
137,472 - HP15_131 0.36 +0.2
137,523 - HP15_131 0.41 -0.5
137,536 + HP15_131 0.42 -0.2
137,539 - HP15_131 0.42 +1.0
137,591 + HP15_131 0.47 -0.5
137,631 + HP15_131 0.51 +0.1
137,683 + HP15_131 0.57 +0.6
137,691 - HP15_131 0.57 +0.1
137,691 - HP15_131 0.57 +0.1
137,735 - HP15_131 0.62 +0.8
137,787 - HP15_131 0.67 -1.0
137,803 + HP15_131 0.69 +1.4
137,811 - HP15_131 0.69 +0.3
137,832 - HP15_131 0.71 +0.6
137,883 - HP15_131 0.77 +2.2
137,893 - HP15_131 0.78 +1.3
137,908 - HP15_131 0.79 +1.4
137,963 + HP15_131 0.84 -0.3
137,968 + HP15_131 0.85 +0.2
137,976 + HP15_131 0.86 -0.6

Or see this region's nucleotide sequence