Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1259 and HP15_1260 are separated by 49 nucleotides HP15_1260 and HP15_1261 overlap by 4 nucleotides HP15_1261 and HP15_1262 overlap by 4 nucleotides
HP15_1259: HP15_1259 - xanthine dehydrogenase accessory factor, at 1,319,445 to 1,320,380
_1259
HP15_1260: HP15_1260 - sugar aldolase, at 1,320,430 to 1,321,056
_1260
HP15_1261: HP15_1261 - acireductone dioxygenase, ARD, at 1,321,053 to 1,321,613
_1261
HP15_1262: HP15_1262 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, at 1,321,610 to 1,322,302
_1262
Position (kb)
1320
1321
1322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1319.441 kb on - strand at 1319.535 kb on - strand at 1319.584 kb on + strand, within HP15_1259 at 1319.621 kb on - strand, within HP15_1259 at 1319.621 kb on - strand, within HP15_1259 at 1319.687 kb on + strand, within HP15_1259 at 1319.687 kb on + strand, within HP15_1259 at 1319.743 kb on - strand, within HP15_1259 at 1319.983 kb on + strand, within HP15_1259 at 1320.085 kb on - strand, within HP15_1259 at 1320.112 kb on + strand, within HP15_1259 at 1320.112 kb on + strand, within HP15_1259 at 1320.141 kb on - strand, within HP15_1259 at 1320.158 kb on + strand, within HP15_1259 at 1320.158 kb on + strand, within HP15_1259 at 1320.361 kb on + strand at 1320.369 kb on - strand at 1320.397 kb on + strand at 1320.591 kb on + strand, within HP15_1260 at 1320.599 kb on - strand, within HP15_1260 at 1320.695 kb on - strand, within HP15_1260 at 1320.695 kb on - strand, within HP15_1260 at 1320.706 kb on - strand, within HP15_1260 at 1320.715 kb on + strand, within HP15_1260 at 1320.791 kb on + strand, within HP15_1260 at 1320.791 kb on + strand, within HP15_1260 at 1320.955 kb on + strand, within HP15_1260 at 1320.963 kb on - strand, within HP15_1260 at 1320.997 kb on + strand at 1321.054 kb on + strand at 1321.054 kb on + strand at 1321.106 kb on - strand at 1321.217 kb on + strand, within HP15_1261 at 1321.474 kb on + strand, within HP15_1261 at 1321.474 kb on + strand, within HP15_1261 at 1321.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,319,441 - -0.3 1,319,535 - +0.8 1,319,584 + HP15_1259 0.15 -0.5 1,319,621 - HP15_1259 0.19 -1.0 1,319,621 - HP15_1259 0.19 +2.3 1,319,687 + HP15_1259 0.26 -0.1 1,319,687 + HP15_1259 0.26 -1.3 1,319,743 - HP15_1259 0.32 -0.2 1,319,983 + HP15_1259 0.57 +0.3 1,320,085 - HP15_1259 0.68 -0.8 1,320,112 + HP15_1259 0.71 -1.1 1,320,112 + HP15_1259 0.71 -0.4 1,320,141 - HP15_1259 0.74 -0.5 1,320,158 + HP15_1259 0.76 -0.2 1,320,158 + HP15_1259 0.76 -0.7 1,320,361 + -1.6 1,320,369 - +0.5 1,320,397 + +0.0 1,320,591 + HP15_1260 0.26 -0.1 1,320,599 - HP15_1260 0.27 +1.0 1,320,695 - HP15_1260 0.42 +1.8 1,320,695 - HP15_1260 0.42 +0.5 1,320,706 - HP15_1260 0.44 -0.4 1,320,715 + HP15_1260 0.45 +1.1 1,320,791 + HP15_1260 0.58 +0.7 1,320,791 + HP15_1260 0.58 -0.9 1,320,955 + HP15_1260 0.84 +0.8 1,320,963 - HP15_1260 0.85 -0.2 1,320,997 + +0.1 1,321,054 + -0.2 1,321,054 + +0.4 1,321,106 - -1.2 1,321,217 + HP15_1261 0.29 -1.2 1,321,474 + HP15_1261 0.75 -0.4 1,321,474 + HP15_1261 0.75 -1.0 1,321,595 + -2.8
Or see this region's nucleotide sequence