Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotides HP15_rRNA9 and HP15_1247 are separated by 66 nucleotides HP15_1247 and HP15_1248 overlap by 4 nucleotides
HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951
_rRNA8
HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166
_rRNA9
HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913
_1247
HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547
_1248
Position (kb)
1304
1305 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1304.231 kb on + strand at 1304.442 kb on + strand, within HP15_1247 at 1304.519 kb on - strand, within HP15_1247 at 1304.528 kb on + strand, within HP15_1247 at 1304.627 kb on - strand, within HP15_1247 at 1304.661 kb on + strand, within HP15_1247 at 1304.828 kb on + strand, within HP15_1247 at 1305.037 kb on + strand at 1305.065 kb on - strand at 1305.172 kb on - strand, within HP15_1248 at 1305.283 kb on - strand, within HP15_1248 at 1305.317 kb on - strand, within HP15_1248 at 1305.340 kb on - strand, within HP15_1248 at 1305.404 kb on - strand, within HP15_1248 at 1305.435 kb on - strand, within HP15_1248 at 1305.476 kb on + strand, within HP15_1248 at 1305.596 kb on + strand, within HP15_1248 at 1305.599 kb on - strand, within HP15_1248 at 1305.692 kb on + strand, within HP15_1248 at 1305.821 kb on + strand, within HP15_1248 at 1305.871 kb on - strand, within HP15_1248
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,304,231 + -1.6 1,304,442 + HP15_1247 0.31 -2.8 1,304,519 - HP15_1247 0.42 -0.5 1,304,528 + HP15_1247 0.43 +0.0 1,304,627 - HP15_1247 0.58 -0.9 1,304,661 + HP15_1247 0.63 +0.6 1,304,828 + HP15_1247 0.87 -2.1 1,305,037 + +1.5 1,305,065 - -0.6 1,305,172 - HP15_1248 0.16 -0.5 1,305,283 - HP15_1248 0.23 +0.8 1,305,317 - HP15_1248 0.25 +0.2 1,305,340 - HP15_1248 0.26 -1.0 1,305,404 - HP15_1248 0.30 -0.9 1,305,435 - HP15_1248 0.32 -0.7 1,305,476 + HP15_1248 0.35 -1.2 1,305,596 + HP15_1248 0.42 -0.5 1,305,599 - HP15_1248 0.42 +0.8 1,305,692 + HP15_1248 0.48 -0.0 1,305,821 + HP15_1248 0.56 +0.9 1,305,871 - HP15_1248 0.59 -3.1
Or see this region's nucleotide sequence