Strain Fitness in Marinobacter adhaerens HP15 around HP15_1185

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1184 and HP15_1185 overlap by 8 nucleotidesHP15_1185 and HP15_1186 are separated by 111 nucleotides HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831 _1184 HP15_1185: HP15_1185 - two component transcriptional regulator, winged helix family, at 1,218,824 to 1,219,558 _1185 HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853 _1186 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1217.828 kb on - strand, within HP15_1184at 1218.008 kb on + strand, within HP15_1184at 1218.248 kb on + strand, within HP15_1184at 1218.380 kb on - strand, within HP15_1184at 1218.485 kb on - strand, within HP15_1184at 1218.523 kb on - strand, within HP15_1184at 1218.523 kb on - strand, within HP15_1184at 1218.653 kb on - strand, within HP15_1184at 1218.682 kb on - strandat 1218.780 kb on - strandat 1218.835 kb on - strandat 1219.129 kb on + strand, within HP15_1185at 1219.149 kb on - strand, within HP15_1185at 1219.215 kb on + strand, within HP15_1185at 1219.221 kb on - strand, within HP15_1185at 1219.269 kb on - strand, within HP15_1185at 1219.310 kb on + strand, within HP15_1185at 1219.310 kb on + strand, within HP15_1185at 1219.555 kb on + strandat 1219.566 kb on + strandat 1219.566 kb on + strandat 1219.623 kb on + strandat 1219.699 kb on - strandat 1219.830 kb on + strandat 1220.014 kb on + strand, within HP15_1186at 1220.020 kb on - strand, within HP15_1186at 1220.058 kb on + strand, within HP15_1186at 1220.128 kb on + strand, within HP15_1186at 1220.157 kb on + strand, within HP15_1186at 1220.157 kb on + strand, within HP15_1186at 1220.162 kb on + strand, within HP15_1186at 1220.165 kb on - strand, within HP15_1186at 1220.212 kb on - strand, within HP15_1186at 1220.223 kb on + strand, within HP15_1186at 1220.392 kb on + strand, within HP15_1186

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,217,828 - HP15_1184 0.39 -2.3
1,218,008 + HP15_1184 0.50 +1.3
1,218,248 + HP15_1184 0.64 -0.4
1,218,380 - HP15_1184 0.72 -0.8
1,218,485 - HP15_1184 0.79 -3.9
1,218,523 - HP15_1184 0.81 -0.0
1,218,523 - HP15_1184 0.81 -0.1
1,218,653 - HP15_1184 0.89 +0.6
1,218,682 - -1.6
1,218,780 - -0.0
1,218,835 - -0.1
1,219,129 + HP15_1185 0.41 -1.2
1,219,149 - HP15_1185 0.44 -1.6
1,219,215 + HP15_1185 0.53 +2.1
1,219,221 - HP15_1185 0.54 -2.3
1,219,269 - HP15_1185 0.61 -1.9
1,219,310 + HP15_1185 0.66 +1.6
1,219,310 + HP15_1185 0.66 -0.4
1,219,555 + -0.1
1,219,566 + -1.0
1,219,566 + +0.2
1,219,623 + +0.6
1,219,699 - +0.4
1,219,830 + -0.4
1,220,014 + HP15_1186 0.16 +3.0
1,220,020 - HP15_1186 0.16 +0.5
1,220,058 + HP15_1186 0.18 -1.9
1,220,128 + HP15_1186 0.21 +0.7
1,220,157 + HP15_1186 0.22 +0.2
1,220,157 + HP15_1186 0.22 +1.1
1,220,162 + HP15_1186 0.23 -0.1
1,220,165 - HP15_1186 0.23 -1.5
1,220,212 - HP15_1186 0.25 -0.3
1,220,223 + HP15_1186 0.25 -2.3
1,220,392 + HP15_1186 0.33 -1.3

Or see this region's nucleotide sequence