Strain Fitness in Marinobacter adhaerens HP15 around HP15_982

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_979 and HP15_980 are separated by 256 nucleotidesHP15_980 and HP15_981 overlap by 73 nucleotidesHP15_981 and HP15_982 are separated by 140 nucleotidesHP15_982 and HP15_983 are separated by 191 nucleotidesHP15_983 and HP15_984 are separated by 94 nucleotides HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380 _979 HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023 _980 HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163 _981 HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279 _982 HP15_983: HP15_983 - glyoxalase family protein, at 993,471 to 993,974 _983 HP15_984: HP15_984 - transcriptional regulator, LysR family protein, at 994,069 to 994,938 _984 Position (kb) 990 991 992 993 994Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 989.389 kb on - strandat 989.399 kb on - strandat 989.415 kb on + strandat 989.553 kb on - strandat 989.580 kb on - strandat 989.649 kb on - strandat 989.663 kb on + strandat 989.830 kb on - strand, within HP15_980at 989.852 kb on + strand, within HP15_980at 989.852 kb on + strand, within HP15_980at 989.860 kb on - strand, within HP15_980at 989.860 kb on - strand, within HP15_980at 989.929 kb on + strand, within HP15_980at 989.959 kb on + strandat 990.009 kb on - strandat 990.018 kb on + strandat 990.097 kb on + strand, within HP15_981at 990.097 kb on + strand, within HP15_981at 990.105 kb on - strand, within HP15_981at 990.211 kb on + strandat 990.229 kb on - strandat 990.229 kb on - strandat 990.399 kb on - strandat 990.458 kb on - strandat 990.474 kb on - strandat 990.474 kb on - strandat 990.474 kb on - strandat 990.488 kb on - strandat 990.501 kb on - strandat 990.626 kb on - strand, within HP15_982at 990.726 kb on + strand, within HP15_982at 990.726 kb on + strand, within HP15_982at 990.734 kb on - strand, within HP15_982at 990.815 kb on + strand, within HP15_982at 990.829 kb on + strand, within HP15_982at 990.829 kb on + strand, within HP15_982at 990.864 kb on + strand, within HP15_982at 990.864 kb on + strand, within HP15_982at 991.047 kb on - strand, within HP15_982at 991.054 kb on - strand, within HP15_982at 991.054 kb on - strand, within HP15_982at 991.111 kb on - strand, within HP15_982at 991.119 kb on + strand, within HP15_982at 991.140 kb on - strand, within HP15_982at 991.140 kb on - strand, within HP15_982at 991.154 kb on - strand, within HP15_982at 991.187 kb on + strand, within HP15_982at 991.200 kb on - strand, within HP15_982at 991.216 kb on - strand, within HP15_982at 991.328 kb on + strand, within HP15_982at 991.407 kb on + strand, within HP15_982at 991.468 kb on - strand, within HP15_982at 991.503 kb on + strand, within HP15_982at 991.526 kb on - strand, within HP15_982at 991.528 kb on + strand, within HP15_982at 991.584 kb on - strand, within HP15_982at 991.743 kb on + strand, within HP15_982at 991.762 kb on + strand, within HP15_982at 991.767 kb on + strand, within HP15_982at 991.812 kb on + strand, within HP15_982at 991.921 kb on + strand, within HP15_982at 991.939 kb on - strand, within HP15_982at 991.943 kb on + strand, within HP15_982at 992.086 kb on - strand, within HP15_982at 992.101 kb on + strand, within HP15_982at 992.109 kb on - strand, within HP15_982at 992.129 kb on + strand, within HP15_982at 992.266 kb on - strand, within HP15_982at 992.273 kb on + strand, within HP15_982at 992.424 kb on + strand, within HP15_982at 992.438 kb on + strand, within HP15_982at 992.573 kb on - strand, within HP15_982at 992.615 kb on - strand, within HP15_982at 992.704 kb on + strand, within HP15_982at 992.707 kb on - strand, within HP15_982at 992.764 kb on - strand, within HP15_982at 992.876 kb on + strand, within HP15_982at 992.884 kb on - strand, within HP15_982at 993.022 kb on + strandat 993.092 kb on - strandat 993.128 kb on - strandat 993.177 kb on + strandat 993.177 kb on + strandat 993.220 kb on - strandat 993.242 kb on + strandat 993.250 kb on - strandat 993.254 kb on + strandat 993.490 kb on + strandat 993.540 kb on + strand, within HP15_983at 993.766 kb on + strand, within HP15_983at 993.792 kb on + strand, within HP15_983at 993.792 kb on + strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.800 kb on - strand, within HP15_983at 993.807 kb on + strand, within HP15_983at 993.815 kb on - strand, within HP15_983at 993.820 kb on - strand, within HP15_983at 993.820 kb on - strand, within HP15_983at 993.891 kb on - strand, within HP15_983at 993.891 kb on - strand, within HP15_983at 993.895 kb on + strand, within HP15_983at 993.914 kb on + strand, within HP15_983at 993.959 kb on + strandat 993.978 kb on - strandat 993.980 kb on + strandat 993.985 kb on + strandat 993.985 kb on + strandat 993.993 kb on - strandat 994.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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989,389 - -1.0
989,399 - +0.4
989,415 + +1.3
989,553 - -2.3
989,580 - -2.5
989,649 - +0.3
989,663 + +2.1
989,830 - HP15_980 0.50 +0.1
989,852 + HP15_980 0.56 +0.3
989,852 + HP15_980 0.56 -0.9
989,860 - HP15_980 0.58 -0.4
989,860 - HP15_980 0.58 +0.2
989,929 + HP15_980 0.75 -0.7
989,959 + -0.2
990,009 - +0.2
990,018 + +0.4
990,097 + HP15_981 0.69 -0.9
990,097 + HP15_981 0.69 -0.6
990,105 - HP15_981 0.72 -0.3
990,211 + -3.0
990,229 - +0.4
990,229 - +0.5
990,399 - -0.7
990,458 - -0.2
990,474 - +1.3
990,474 - +0.0
990,474 - -0.5
990,488 - -0.9
990,501 - -0.0
990,626 - HP15_982 0.11 +0.5
990,726 + HP15_982 0.14 -0.2
990,726 + HP15_982 0.14 +0.5
990,734 - HP15_982 0.14 +3.6
990,815 + HP15_982 0.17 +0.5
990,829 + HP15_982 0.18 +0.4
990,829 + HP15_982 0.18 +0.0
990,864 + HP15_982 0.19 -0.2
990,864 + HP15_982 0.19 +0.2
991,047 - HP15_982 0.25 -0.1
991,054 - HP15_982 0.25 +0.0
991,054 - HP15_982 0.25 -1.0
991,111 - HP15_982 0.27 +1.8
991,119 + HP15_982 0.27 -0.8
991,140 - HP15_982 0.28 +0.4
991,140 - HP15_982 0.28 -0.3
991,154 - HP15_982 0.29 +2.7
991,187 + HP15_982 0.30 +0.4
991,200 - HP15_982 0.30 -0.9
991,216 - HP15_982 0.31 -0.5
991,328 + HP15_982 0.34 +1.0
991,407 + HP15_982 0.37 +1.6
991,468 - HP15_982 0.39 -0.0
991,503 + HP15_982 0.40 +1.2
991,526 - HP15_982 0.41 +0.6
991,528 + HP15_982 0.41 +1.0
991,584 - HP15_982 0.43 -3.7
991,743 + HP15_982 0.48 -1.6
991,762 + HP15_982 0.49 +0.6
991,767 + HP15_982 0.49 -0.5
991,812 + HP15_982 0.51 -1.0
991,921 + HP15_982 0.54 -1.7
991,939 - HP15_982 0.55 +0.8
991,943 + HP15_982 0.55 +2.3
992,086 - HP15_982 0.60 -0.7
992,101 + HP15_982 0.60 -1.4
992,109 - HP15_982 0.61 -0.5
992,129 + HP15_982 0.61 +0.2
992,266 - HP15_982 0.66 -0.5
992,273 + HP15_982 0.66 -2.3
992,424 + HP15_982 0.71 -1.6
992,438 + HP15_982 0.72 -0.4
992,573 - HP15_982 0.76 -1.2
992,615 - HP15_982 0.78 +1.6
992,704 + HP15_982 0.81 +1.8
992,707 - HP15_982 0.81 -1.6
992,764 - HP15_982 0.83 +0.8
992,876 + HP15_982 0.86 +1.3
992,884 - HP15_982 0.87 -0.1
993,022 + +0.5
993,092 - +0.0
993,128 - -0.1
993,177 + -1.0
993,177 + +1.0
993,220 - -1.8
993,242 + -0.5
993,250 - +0.2
993,254 + +1.0
993,490 + +2.3
993,540 + HP15_983 0.14 -0.6
993,766 + HP15_983 0.59 +0.0
993,792 + HP15_983 0.64 -2.3
993,792 + HP15_983 0.64 -0.8
993,800 - HP15_983 0.65 +0.1
993,800 - HP15_983 0.65 +0.0
993,800 - HP15_983 0.65 -0.5
993,807 + HP15_983 0.67 +0.6
993,815 - HP15_983 0.68 +0.6
993,820 - HP15_983 0.69 +0.1
993,820 - HP15_983 0.69 +1.0
993,891 - HP15_983 0.83 +0.0
993,891 - HP15_983 0.83 -1.2
993,895 + HP15_983 0.84 -0.8
993,914 + HP15_983 0.88 -0.9
993,959 + +0.1
993,978 - -2.3
993,980 + -0.3
993,985 + +1.8
993,985 + +0.8
993,993 - +1.8
994,014 - -3.3

Or see this region's nucleotide sequence