Strain Fitness in Shewanella amazonensis SB2B around Sama_3279

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
3,893,797	-		Sama_3278	0.42	-2.2
3,893,863	+		Sama_3278	0.47	-4.7
3,893,864	-		Sama_3278	0.47	-2.9
3,893,864	-		Sama_3278	0.47	-3.0
3,893,919	+		Sama_3278	0.50	-3.7
3,893,919	+		Sama_3278	0.50	-2.3
3,893,919	+		Sama_3278	0.50	-3.3
3,893,919	+		Sama_3278	0.50	-3.8
3,893,919	+		Sama_3278	0.50	-3.5
3,893,920	-		Sama_3278	0.50	-2.2
3,893,920	-		Sama_3278	0.50	-4.0
3,893,920	-		Sama_3278	0.50	-2.8
3,893,920	-		Sama_3278	0.50	-2.5
3,893,920	-		Sama_3278	0.50	-2.0
3,893,997	-		Sama_3278	0.55	-5.2
3,894,031	+		Sama_3278	0.57	-3.3
3,894,031	+		Sama_3278	0.57	-3.1
3,894,031	+		Sama_3278	0.57	-2.6
3,894,031	+		Sama_3278	0.57	-2.0
3,894,093	+		Sama_3278	0.61	-4.5
3,894,093	+		Sama_3278	0.61	-1.0
3,894,093	+		Sama_3278	0.61	-3.8
3,894,093	+		Sama_3278	0.61	-1.1
3,894,094	-		Sama_3278	0.61	-1.6
3,894,094	-		Sama_3278	0.61	-2.1
3,894,094	-		Sama_3278	0.61	-2.8
3,894,094	-		Sama_3278	0.61	-2.3
3,894,094	-		Sama_3278	0.61	-3.5
3,894,094	-		Sama_3278	0.61	-3.8
3,894,094	-		Sama_3278	0.61	-1.9
3,894,094	-		Sama_3278	0.61	-2.1
3,894,096	+		Sama_3278	0.61	-3.1
3,894,096	+		Sama_3278	0.61	-5.3
3,894,096	+		Sama_3278	0.61	-4.0
3,894,097	-		Sama_3278	0.61	-1.6
3,894,097	-		Sama_3278	0.61	-0.2
3,894,097	-		Sama_3278	0.61	-4.0
3,894,143	+		Sama_3278	0.64	-4.1
3,894,143	+		Sama_3278	0.64	-2.1
3,894,144	-		Sama_3278	0.64	-1.1
3,894,144	-		Sama_3278	0.64	-2.7
3,894,144	-		Sama_3278	0.64	-3.0
3,894,232	+		Sama_3278	0.70	-2.7
3,894,233	-		Sama_3278	0.70	-1.7
3,894,234	+		Sama_3278	0.70	-1.0
3,894,234	+		Sama_3278	0.70	-2.1
3,894,235	-		Sama_3278	0.70	-2.7
3,894,235	-		Sama_3278	0.70	-2.6
3,894,235	-		Sama_3278	0.70	-4.9
3,894,235	-		Sama_3278	0.70	-4.1
3,894,235	-		Sama_3278	0.70	-3.6
3,894,235	-		Sama_3278	0.70	-2.7
3,894,235	-		Sama_3278	0.70	-1.9
3,894,371	+		Sama_3278	0.78	-3.9
3,894,371	+		Sama_3278	0.78	-3.5
3,894,372	-		Sama_3278	0.78	-2.8
3,894,372	-		Sama_3278	0.78	-3.6
3,894,372	-		Sama_3278	0.78	-3.1
3,894,372	-		Sama_3278	0.78	-2.4
3,894,372	-		Sama_3278	0.78	-4.5
3,894,372	-		Sama_3278	0.78	-2.9
3,894,443	+		Sama_3278	0.83	-1.1
3,894,444	-		Sama_3278	0.83	-3.6
3,894,492	+		Sama_3278	0.86	-1.4
3,894,493	-		Sama_3278	0.86	-2.1
3,894,493	-		Sama_3278	0.86	-3.0
3,894,493	-		Sama_3278	0.86	-3.6
3,894,508	+		Sama_3278	0.87	-1.6
3,894,542	+		Sama_3278	0.89	-4.1
3,894,546	+		Sama_3278	0.89	-1.8
3,894,546	+		Sama_3278	0.89	-3.0
3,894,546	+		Sama_3278	0.89	-4.5
3,894,547	-		Sama_3278	0.89	-1.7
3,894,547	-		Sama_3278	0.89	-2.5
3,894,615	+				+0.6
3,894,615	+				-3.0
3,894,615	+				-1.3
3,894,615	+				-1.4
3,894,615	+				-0.6
3,894,615	+				-2.5
3,894,616	-				-4.3
3,894,616	-				-3.7
3,894,616	-				-3.5
3,894,616	-				-1.0
3,894,616	-				-2.1
3,894,616	-				-1.7
3,894,645	+				-2.4
3,894,645	+				+1.0
3,894,645	+				-0.3
3,894,646	-				-2.2
3,894,646	-				-1.3
3,894,646	-				-3.8
3,894,646	-				-1.9
3,894,646	-				-3.1
3,894,648	+				-3.5
3,894,648	+				-0.3
3,894,648	+				-3.1
3,894,649	-				-4.6
3,894,682	+				-2.5
3,894,682	+				-3.4
3,894,682	+				-2.9
3,894,683	-				-1.3
3,894,683	-				-0.9
3,894,683	-				-0.2
3,894,781	+				-1.0
3,894,781	+				-3.0
3,894,781	+				-3.2
3,894,782	-				-3.9
3,894,782	-				-3.7
3,894,782	-				-2.6
3,894,782	-				-3.8
3,894,782	-				-3.5
3,894,930	-		Sama_3279	0.11	-3.6
3,894,954	+		Sama_3279	0.13	-4.4
3,894,954	+		Sama_3279	0.13	-0.9
3,894,955	-		Sama_3279	0.13	-1.7
3,894,955	-		Sama_3279	0.13	-4.6
3,894,955	-		Sama_3279	0.13	-3.9
3,895,071	+		Sama_3279	0.19	-1.8
3,895,075	+		Sama_3279	0.19	-1.8
3,895,075	+		Sama_3279	0.19	-3.7
3,895,076	-		Sama_3279	0.19	-1.7
3,895,088	-		Sama_3279	0.20	-0.8
3,895,204	+		Sama_3279	0.26	-2.1
3,895,204	+		Sama_3279	0.26	-1.8
3,895,204	+		Sama_3279	0.26	-1.1
3,895,204	+		Sama_3279	0.26	-2.3
3,895,204	+		Sama_3279	0.26	+0.0
3,895,204	+		Sama_3279	0.26	-2.8
3,895,204	+		Sama_3279	0.26	-2.5
3,895,205	-		Sama_3279	0.26	-0.8
3,895,205	-		Sama_3279	0.26	-1.7
3,895,205	-		Sama_3279	0.26	-3.7
3,895,205	-		Sama_3279	0.26	-4.4
3,895,205	-		Sama_3279	0.26	-3.2
3,895,205	-		Sama_3279	0.26	-3.8
3,895,205	-		Sama_3279	0.26	-3.6
3,895,205	-		Sama_3279	0.26	-1.8
3,895,205	-		Sama_3279	0.26	-2.1
3,895,205	-		Sama_3279	0.26	-3.6
3,895,206	+		Sama_3279	0.26	-2.7
3,895,206	+		Sama_3279	0.26	+0.2
3,895,206	+		Sama_3279	0.26	-3.2
3,895,206	+		Sama_3279	0.26	-0.3
3,895,206	+		Sama_3279	0.26	-1.4
3,895,207	-		Sama_3279	0.26	-2.1
3,895,207	-		Sama_3279	0.26	-2.6
3,895,207	-		Sama_3279	0.26	-2.4
3,895,207	-		Sama_3279	0.26	-4.4
3,895,207	-		Sama_3279	0.26	-1.0
3,895,207	-		Sama_3279	0.26	-2.0
3,895,265	+		Sama_3279	0.30	-1.1
3,895,374	-		Sama_3279	0.35	-3.5
3,895,409	+		Sama_3279	0.37	-2.6
3,895,410	-		Sama_3279	0.37	-1.3
3,895,410	-		Sama_3279	0.37	-1.9
3,895,527	+		Sama_3279	0.44	-1.4
3,895,527	+		Sama_3279	0.44	-1.9
3,895,527	+		Sama_3279	0.44	-3.1
3,895,527	+		Sama_3279	0.44	-2.8
3,895,527	+		Sama_3279	0.44	-2.0
3,895,527	+		Sama_3279	0.44	-3.1
3,895,528	-		Sama_3279	0.44	-0.3
3,895,528	-		Sama_3279	0.44	-2.5
3,895,528	-		Sama_3279	0.44	-3.1
3,895,528	-		Sama_3279	0.44	-2.1
3,895,528	-		Sama_3279	0.44	-4.0
3,895,528	-		Sama_3279	0.44	-1.7
3,895,528	-		Sama_3279	0.44	-2.4
3,895,528	-		Sama_3279	0.44	-1.8
3,895,528	-		Sama_3279	0.44	-4.1
3,895,578	+		Sama_3279	0.46	-3.2
3,895,578	+		Sama_3279	0.46	-2.8
3,895,579	-		Sama_3279	0.46	-2.4
3,895,579	-		Sama_3279	0.46	-3.9
3,895,579	-		Sama_3279	0.46	-3.4
3,895,579	-		Sama_3279	0.46	-3.7
3,895,579	-		Sama_3279	0.46	-2.7
3,895,608	-		Sama_3279	0.48	-2.0
3,895,608	-		Sama_3279	0.48	-2.6
3,895,612	+		Sama_3279	0.48	-4.8
3,895,612	+		Sama_3279	0.48	-2.9
3,895,612	+		Sama_3279	0.48	-3.3
3,895,612	+		Sama_3279	0.48	-3.3
3,895,612	+		Sama_3279	0.48	-1.0
3,895,612	+		Sama_3279	0.48	-1.6
3,895,612	+		Sama_3279	0.48	-3.6
3,895,612	+		Sama_3279	0.48	-3.7
3,895,613	-		Sama_3279	0.48	-1.7
3,895,613	-		Sama_3279	0.48	-4.9
3,895,613	-		Sama_3279	0.48	-2.4
3,895,613	-		Sama_3279	0.48	-1.8
3,895,613	-		Sama_3279	0.48	-2.1
3,895,613	-		Sama_3279	0.48	-4.5
3,895,613	-		Sama_3279	0.48	-2.8
3,895,622	+		Sama_3279	0.49	-2.8
3,895,622	+		Sama_3279	0.49	-3.3
3,895,728	+		Sama_3279	0.54	-1.1
3,895,728	+		Sama_3279	0.54	-3.8
3,895,729	-		Sama_3279	0.54	-0.8
3,895,729	-		Sama_3279	0.54	-2.4
3,895,729	-		Sama_3279	0.54	-1.6
3,895,729	-		Sama_3279	0.54	-3.0
3,895,733	+		Sama_3279	0.55	-4.8
3,895,733	+		Sama_3279	0.55	-2.2
3,895,734	-		Sama_3279	0.55	-3.4
3,895,734	-		Sama_3279	0.55	-0.6
3,895,834	+		Sama_3279	0.60	-2.8
3,895,834	+		Sama_3279	0.60	-3.7
3,895,835	-		Sama_3279	0.60	-1.6
3,895,835	-		Sama_3279	0.60	-3.7
3,895,835	-		Sama_3279	0.60	-2.7
3,895,835	-		Sama_3279	0.60	-4.0
3,895,835	-		Sama_3279	0.60	-3.8
3,895,835	-		Sama_3279	0.60	-2.3
3,895,835	-		Sama_3279	0.60	-3.1
3,895,835	-		Sama_3279	0.60	-2.7
3,895,837	+		Sama_3279	0.60	-1.6
3,895,837	+		Sama_3279	0.60	-4.2
3,895,837	+		Sama_3279	0.60	-3.2
3,895,838	-		Sama_3279	0.60	-4.3
3,896,049	-		Sama_3279	0.72	-3.1
3,896,049	-		Sama_3279	0.72	-2.5
3,896,093	+		Sama_3279	0.74	-4.0
3,896,093	+		Sama_3279	0.74	-3.5
3,896,093	+		Sama_3279	0.74	-3.9
3,896,094	-		Sama_3279	0.74	-2.7
3,896,094	-		Sama_3279	0.74	-5.0
3,896,165	+		Sama_3279	0.78	-3.4
3,896,166	-		Sama_3279	0.78	-6.3
3,896,166	-		Sama_3279	0.78	-3.8
3,896,166	-		Sama_3279	0.78	-4.4
3,896,250	+		Sama_3279	0.83	-3.7
3,896,250	+		Sama_3279	0.83	-2.2
3,896,250	+		Sama_3279	0.83	-1.4
3,896,250	+		Sama_3279	0.83	-1.6
3,896,251	-		Sama_3279	0.83	-3.7
3,896,251	-		Sama_3279	0.83	-2.3
3,896,251	-		Sama_3279	0.83	-3.1
3,896,257	+		Sama_3279	0.83	-2.1
3,896,257	+		Sama_3279	0.83	-3.1
3,896,257	+		Sama_3279	0.83	-1.9
3,896,258	-		Sama_3279	0.83	-4.1
3,896,258	-		Sama_3279	0.83	-2.8
3,896,258	-		Sama_3279	0.83	-2.6
3,896,258	-		Sama_3279	0.83	-3.0
3,896,258	-		Sama_3279	0.83	-3.2
3,896,258	-		Sama_3279	0.83	-3.0
3,896,292	+		Sama_3279	0.85	-4.8
3,896,292	+		Sama_3279	0.85	-1.8
3,896,293	-		Sama_3279	0.85	-4.3
3,896,299	+		Sama_3279	0.85	-2.2
3,896,299	+		Sama_3279	0.85	-2.0
3,896,299	+		Sama_3279	0.85	-4.2
3,896,299	+		Sama_3279	0.85	-2.0
3,896,300	-		Sama_3279	0.85	-3.7
3,896,300	-		Sama_3279	0.85	-3.1
3,896,300	-		Sama_3279	0.85	-4.7
3,896,415	+				-3.1
3,896,416	-				-1.4
3,896,416	-				-1.9
3,896,416	-				-3.2
3,896,416	-				-1.4
3,896,444	+				-2.0
3,896,445	-				-4.0
3,896,531	+				+2.3
3,896,563	-				-2.2
3,896,563	-				-3.1
3,896,567	+				-1.0
3,896,567	+				-3.5
3,896,567	+				-3.8
3,896,568	-				-2.3
3,896,616	+				-3.4
3,896,616	+				-2.2
3,896,616	+				-3.7
3,896,617	-				-1.6
3,896,617	-				-1.0
3,896,620	+				-4.3
3,896,620	+				-3.2
3,896,620	+				-3.3
3,896,620	+				-1.6
3,896,620	+				-1.6
3,896,621	-				+0.8
3,896,621	-				+1.4
3,896,621	-				-0.9
3,896,621	-				-0.8
3,896,621	-				+1.4
3,896,621	-				+0.9
3,896,621	-				-0.8
3,896,621	-				+0.7
3,896,621	-				-0.3
3,896,625	+				-3.3
3,896,625	+				-1.4
3,896,625	+				-4.0
3,896,625	+				-2.9
3,896,625	+				-4.6
3,896,625	+				-1.3
3,896,626	-				-2.9
3,896,626	-				+0.5
3,896,626	-				-1.1
3,896,626	-				-0.2
3,896,626	-				+0.1
3,896,626	-				-0.5
3,896,655	+				-4.5
3,896,728	+	ilvM	Sama_3280	0.26	-3.5
3,896,728	+	ilvM	Sama_3280	0.26	-0.8
3,896,728	+	ilvM	Sama_3280	0.26	-1.7
3,896,728	+	ilvM	Sama_3280	0.26	-2.0
3,896,728	+	ilvM	Sama_3280	0.26	-1.6
3,896,728	+	ilvM	Sama_3280	0.26	-0.3
3,896,729	-	ilvM	Sama_3280	0.26	-1.0
3,896,729	-	ilvM	Sama_3280	0.26	-2.0
3,896,729	-	ilvM	Sama_3280	0.26	+0.0
3,896,729	-	ilvM	Sama_3280	0.26	-0.3
3,896,787	+	ilvM	Sama_3280	0.49	-3.2
3,896,787	+	ilvM	Sama_3280	0.49	-3.6
3,896,787	+	ilvM	Sama_3280	0.49	-2.4
3,896,787	+	ilvM	Sama_3280	0.49	-3.6
3,896,788	-	ilvM	Sama_3280	0.50	-1.4
3,896,812	+	ilvM	Sama_3280	0.59	-1.3
3,896,813	-	ilvM	Sama_3280	0.60	-1.0
3,896,813	-	ilvM	Sama_3280	0.60	-1.3
3,896,813	-	ilvM	Sama_3280	0.60	-1.0
3,896,813	-	ilvM	Sama_3280	0.60	-1.9
3,896,813	-	ilvM	Sama_3280	0.60	-3.4
3,896,813	-	ilvM	Sama_3280	0.60	-1.0
3,896,813	-	ilvM	Sama_3280	0.60	-3.2
3,896,830	+	ilvM	Sama_3280	0.66	-3.0
3,896,831	-	ilvM	Sama_3280	0.67	-0.1
3,896,831	-	ilvM	Sama_3280	0.67	+0.7
3,896,905	+				-4.6
3,896,905	+				-3.6
3,896,905	+				-2.5
3,896,906	-				+0.2
3,896,940	+				-2.5
3,896,940	+				-4.3
3,896,940	+				-2.9
3,896,940	+				-3.6
3,896,940	+				-3.4
3,896,983	-				+1.4
3,896,995	+				-3.7
3,896,995	+				-1.8
3,896,995	+				-1.8
3,896,995	+				-2.7
3,896,995	+				-3.0
3,896,995	+				-1.9
3,896,996	-				-2.0
3,896,996	-				-1.9
3,896,996	-				+1.1
3,896,996	-				-1.6
3,896,996	-				+0.6
3,896,996	-				-1.1
3,896,996	-				+1.4
3,896,996	-				-2.1
3,896,996	-				-1.3
3,896,996	-				-0.9
3,896,996	-				-1.5
3,897,014	+				-2.3
3,897,014	+				-3.6
3,897,014	+				-2.6
3,897,015	-				-1.3
3,897,015	-				-1.6
3,897,015	-				-0.3
3,897,149	+		Sama_3281	0.14	-0.8
3,897,149	+		Sama_3281	0.14	-3.4
3,897,150	-		Sama_3281	0.14	-1.8
3,897,210	+		Sama_3281	0.18	-3.3
3,897,249	+		Sama_3281	0.20	-1.1
3,897,249	+		Sama_3281	0.20	-1.4
3,897,249	+		Sama_3281	0.20	-3.4
3,897,250	-		Sama_3281	0.20	-1.4
3,897,411	+		Sama_3281	0.30	-3.7
3,897,411	+		Sama_3281	0.30	-3.7
3,897,411	+		Sama_3281	0.30	-1.3
3,897,411	+		Sama_3281	0.30	-3.2
3,897,411	+		Sama_3281	0.30	-1.4
3,897,411	+		Sama_3281	0.30	-3.1
3,897,411	+		Sama_3281	0.30	-3.9
3,897,411	+		Sama_3281	0.30	-3.2
3,897,411	+		Sama_3281	0.30	-2.5
3,897,411	+		Sama_3281	0.30	-3.3
3,897,411	+		Sama_3281	0.30	-2.0
3,897,411	+		Sama_3281	0.30	-4.7
3,897,411	+		Sama_3281	0.30	-3.6
3,897,411	+		Sama_3281	0.30	-2.5
3,897,412	-		Sama_3281	0.30	-3.3
3,897,412	-		Sama_3281	0.30	+0.0
3,897,412	-		Sama_3281	0.30	-3.3
3,897,412	-		Sama_3281	0.30	-1.8
3,897,412	-		Sama_3281	0.30	-1.4
3,897,412	-		Sama_3281	0.30	-0.4
3,897,412	-		Sama_3281	0.30	-4.0
3,897,412	-		Sama_3281	0.30	-0.9
3,897,412	-		Sama_3281	0.30	-3.7
3,897,412	-		Sama_3281	0.30	+1.8
3,897,412	-		Sama_3281	0.30	-3.6
3,897,412	-		Sama_3281	0.30	-1.8
3,897,457	+		Sama_3281	0.33	-3.4
3,897,457	+		Sama_3281	0.33	-3.0
3,897,457	+		Sama_3281	0.33	-1.7
3,897,458	-		Sama_3281	0.33	-0.7
3,897,458	-		Sama_3281	0.33	+0.7
3,897,458	-		Sama_3281	0.33	-3.3
3,897,458	-		Sama_3281	0.33	-1.3
3,897,509	+		Sama_3281	0.36	-3.8
3,897,509	+		Sama_3281	0.36	-2.5
3,897,509	+		Sama_3281	0.36	-2.8
3,897,509	+		Sama_3281	0.36	-4.0
3,897,509	+		Sama_3281	0.36	-2.4
3,897,509	+		Sama_3281	0.36	-3.0
3,897,509	+		Sama_3281	0.36	-4.0
3,897,510	-		Sama_3281	0.36	-3.1
3,897,510	-		Sama_3281	0.36	-2.7
3,897,510	-		Sama_3281	0.36	+0.2
3,897,510	-		Sama_3281	0.36	-1.9
3,897,510	-		Sama_3281	0.36	-1.7
3,897,510	-		Sama_3281	0.36	+0.3
3,897,510	-		Sama_3281	0.36	-1.8
3,897,510	-		Sama_3281	0.36	-0.5
3,897,510	-		Sama_3281	0.36	-2.1
3,897,533	+		Sama_3281	0.37	-3.1
3,897,534	-		Sama_3281	0.37	-2.3
3,897,534	-		Sama_3281	0.37	-3.4