Strain Fitness in Shewanella amazonensis SB2B around Sama_3165

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
3,750,965	-		Sama_3163	0.83	+1.2
3,751,029	-		Sama_3163	0.86	-0.3
3,751,029	-		Sama_3163	0.86	-1.4
3,751,029	-		Sama_3163	0.86	-2.1
3,751,029	-		Sama_3163	0.86	+0.3
3,751,070	-		Sama_3163	0.88	+0.7
3,751,070	-		Sama_3163	0.88	-1.4
3,751,072	+		Sama_3163	0.88	-0.3
3,751,072	+		Sama_3163	0.88	+3.7
3,751,072	+		Sama_3163	0.88	+0.6
3,751,072	+		Sama_3163	0.88	-0.4
3,751,072	+		Sama_3163	0.88	+2.5
3,751,072	+		Sama_3163	0.88	-0.9
3,751,072	+		Sama_3163	0.88	-0.3
3,751,072	+		Sama_3163	0.88	+1.0
3,751,072	+		Sama_3163	0.88	-0.3
3,751,072	+		Sama_3163	0.88	+1.1
3,751,072	+		Sama_3163	0.88	-0.1
3,751,073	-		Sama_3163	0.89	-0.9
3,751,073	-		Sama_3163	0.89	-1.2
3,751,073	-		Sama_3163	0.89	-2.1
3,751,099	+		Sama_3163	0.90	-1.2
3,751,099	+		Sama_3163	0.90	-2.5
3,751,099	+		Sama_3163	0.90	-1.5
3,751,099	+		Sama_3163	0.90	+1.4
3,751,099	+		Sama_3163	0.90	+0.5
3,751,099	+		Sama_3163	0.90	+0.2
3,751,099	+		Sama_3163	0.90	+0.1
3,751,099	+		Sama_3163	0.90	+0.2
3,751,100	-		Sama_3163	0.90	-0.9
3,751,100	-		Sama_3163	0.90	+2.7
3,751,100	-		Sama_3163	0.90	-0.9
3,751,100	-		Sama_3163	0.90	+1.5
3,751,100	-		Sama_3163	0.90	-1.4
3,751,100	-		Sama_3163	0.90	+0.1
3,751,100	-		Sama_3163	0.90	-0.7
3,751,100	-		Sama_3163	0.90	-2.1
3,751,100	-		Sama_3163	0.90	+1.0
3,751,100	-		Sama_3163	0.90	-0.4
3,751,100	-		Sama_3163	0.90	+0.4
3,751,139	+				-0.5
3,751,140	-				+2.0
3,751,140	-				-1.3
3,751,174	+				-0.2
3,751,174	+				+1.2
3,751,174	+				-0.4
3,751,174	+				-0.9
3,751,174	+				+0.2
3,751,175	-				+1.9
3,751,184	+				+0.6
3,751,184	+				-0.6
3,751,184	+				+2.0
3,751,185	-				-1.5
3,751,185	-				-0.7
3,751,255	+				+0.1
3,751,255	+				-1.0
3,751,255	+				+0.1
3,751,255	+				+1.6
3,751,255	+				-1.0
3,751,255	+				-0.1
3,751,255	+				-0.5
3,751,256	-				+1.5
3,751,256	-				+0.7
3,751,256	-				-0.2
3,751,256	-				-0.5
3,751,256	-				+0.4
3,751,256	-				-0.8
3,751,376	+				-0.1
3,751,376	+				+0.4
3,751,376	+				+2.5
3,751,377	-				-1.3
3,751,377	-				+0.1
3,751,377	-				-0.1
3,751,394	-				-0.6
3,751,394	-				-0.4
3,751,401	+				-0.9
3,751,401	+				-2.3
3,751,401	+				+0.8
3,751,402	-				-0.6
3,751,402	-				-0.6
3,751,402	-				-1.5
3,751,402	-				-0.8
3,751,413	+				-0.9
3,751,414	-				-0.3
3,751,414	-				+0.1
3,751,414	-				+0.4
3,751,414	-				-1.6
3,751,414	-				+0.3
3,751,414	-				+2.3
3,751,414	-				-0.8
3,751,424	+				-0.2
3,751,424	+				-1.3
3,751,424	+				+0.1
3,751,424	+				+0.6
3,751,424	+				-0.8
3,751,424	+				+0.5
3,751,424	+				+0.1
3,751,424	+				-1.2
3,751,424	+				-1.3
3,751,424	+				+0.5
3,751,424	+				-1.6
3,751,424	+				+1.8
3,751,424	+				-1.5
3,751,425	-				+0.1
3,751,425	-				-0.2
3,751,425	-				+0.8
3,751,425	-				+1.1
3,751,425	-				+1.4
3,751,425	-				-0.4
3,751,425	-				-0.5
3,751,425	-				+1.7
3,751,425	-				-2.4
3,751,425	-				-1.1
3,751,425	-				-0.2
3,751,425	-				+0.7
3,751,425	-				+0.6
3,751,425	-				-0.8
3,751,425	-				-0.3
3,751,434	+				-1.0
3,751,446	+				-0.6
3,751,446	+				-0.9
3,751,482	-				+0.3
3,751,484	+				-0.6
3,751,532	+				+0.8
3,751,613	-				-0.2
3,751,623	+				-1.1
3,751,628	-				+0.5
3,751,628	-				-1.3
3,751,647	-				-1.5
3,751,658	-				-0.2
3,751,658	-				-0.5
3,751,679	+		Sama_3164	0.17	+1.0
3,751,770	+		Sama_3164	0.67	-0.3
3,751,770	+		Sama_3164	0.67	+1.0
3,751,770	+		Sama_3164	0.67	-1.6
3,751,770	+		Sama_3164	0.67	-1.3
3,751,771	-		Sama_3164	0.68	-0.8
3,751,771	-		Sama_3164	0.68	-0.7
3,751,771	-		Sama_3164	0.68	-0.3
3,751,827	+				-1.2
3,751,827	+				-0.7
3,751,843	+				-0.8
3,751,844	-				-0.2
3,751,844	-				-0.9
3,751,844	-				-0.7
3,751,873	+				-0.5
3,751,873	+				-0.6
3,751,889	+				+0.1
3,751,889	+				-1.9
3,751,890	-				-0.6
3,751,890	-				+0.3
3,751,921	+				+0.1
3,751,921	+				+0.7
3,751,922	-				+0.2
3,751,946	+				+0.2
3,751,973	+				+0.9
3,751,973	+				-0.7
3,751,974	-				-0.6
3,751,974	-				-1.9
3,751,974	-				-1.2
3,752,047	+				-0.4
3,752,047	+				-0.0
3,752,047	+				-2.4
3,752,047	+				+0.6
3,752,047	+				+0.0
3,752,048	-				-1.0
3,752,048	-				-1.3
3,752,048	-				-1.0
3,752,048	+				-0.1
3,752,048	-				+1.5
3,752,100	+		Sama_3165	0.11	-1.3
3,752,101	-		Sama_3165	0.11	-0.5
3,752,101	-		Sama_3165	0.11	-1.4
3,752,110	-		Sama_3165	0.12	-0.0
3,752,124	-		Sama_3165	0.13	-0.5
3,752,124	-		Sama_3165	0.13	-0.2
3,752,223	+		Sama_3165	0.20	-2.0
3,752,224	-		Sama_3165	0.20	-0.2
3,752,224	-		Sama_3165	0.20	-0.5
3,752,224	-		Sama_3165	0.20	+0.5
3,752,227	+		Sama_3165	0.20	-0.7
3,752,227	+		Sama_3165	0.20	+0.8
3,752,227	+		Sama_3165	0.20	+1.0
3,752,227	+		Sama_3165	0.20	+1.0
3,752,227	+		Sama_3165	0.20	+1.0
3,752,228	-		Sama_3165	0.20	-1.7
3,752,255	+		Sama_3165	0.22	-0.7
3,752,255	+		Sama_3165	0.22	+0.3
3,752,362	+		Sama_3165	0.30	+0.8
3,752,362	+		Sama_3165	0.30	-0.8
3,752,362	+		Sama_3165	0.30	+0.1
3,752,363	-		Sama_3165	0.30	-0.6
3,752,393	+		Sama_3165	0.33	-0.2
3,752,393	+		Sama_3165	0.33	+1.3
3,752,393	+		Sama_3165	0.33	-0.7
3,752,393	+		Sama_3165	0.33	-0.2
3,752,393	+		Sama_3165	0.33	+0.5
3,752,394	-		Sama_3165	0.33	-0.1
3,752,394	-		Sama_3165	0.33	+1.5
3,752,394	-		Sama_3165	0.33	+0.1
3,752,395	+		Sama_3165	0.33	-2.1
3,752,395	+		Sama_3165	0.33	+1.0
3,752,395	+		Sama_3165	0.33	+0.2
3,752,395	+		Sama_3165	0.33	-0.6
3,752,395	+		Sama_3165	0.33	+0.3
3,752,395	+		Sama_3165	0.33	+0.3
3,752,396	-		Sama_3165	0.33	+0.0
3,752,495	+		Sama_3165	0.40	+0.1
3,752,496	-		Sama_3165	0.40	+1.9
3,752,526	+		Sama_3165	0.42	-0.2
3,752,526	+		Sama_3165	0.42	-0.6
3,752,572	+		Sama_3165	0.46	-1.8
3,752,572	+		Sama_3165	0.46	-0.4
3,752,573	-		Sama_3165	0.46	-0.7
3,752,573	-		Sama_3165	0.46	-0.6
3,752,618	+		Sama_3165	0.49	-0.9
3,752,618	+		Sama_3165	0.49	+0.4
3,752,618	+		Sama_3165	0.49	+0.4
3,752,618	+		Sama_3165	0.49	+0.8
3,752,618	+		Sama_3165	0.49	-1.8
3,752,619	-		Sama_3165	0.49	-1.7
3,752,619	-		Sama_3165	0.49	+0.4
3,752,619	-		Sama_3165	0.49	+0.0
3,752,619	-		Sama_3165	0.49	+1.4
3,752,619	-		Sama_3165	0.49	-0.2
3,752,619	-		Sama_3165	0.49	-0.3
3,752,619	-		Sama_3165	0.49	+0.0
3,752,619	-		Sama_3165	0.49	-1.0
3,752,640	+		Sama_3165	0.51	+0.1
3,752,641	-		Sama_3165	0.51	-1.7
3,752,815	+		Sama_3165	0.64	-0.6
3,752,816	-		Sama_3165	0.64	-0.4
3,752,839	+		Sama_3165	0.65	+0.4
3,752,849	+		Sama_3165	0.66	+2.8
3,752,850	-		Sama_3165	0.66	-0.4
3,752,850	-		Sama_3165	0.66	-0.2
3,752,874	+		Sama_3165	0.68	+0.1
3,752,956	+		Sama_3165	0.74	+0.4
3,752,957	-		Sama_3165	0.74	-0.8
3,752,963	+		Sama_3165	0.75	-0.4
3,753,061	+		Sama_3165	0.82	+4.2
3,753,071	-		Sama_3165	0.83	-1.3
3,753,076	+		Sama_3165	0.83	-2.0
3,753,076	+		Sama_3165	0.83	-1.6
3,753,077	-		Sama_3165	0.83	+0.9
3,753,077	-		Sama_3165	0.83	+0.3
3,753,083	+		Sama_3165	0.83	-0.7
3,753,083	+		Sama_3165	0.83	+1.3
3,753,083	+		Sama_3165	0.83	+0.3
3,753,083	+		Sama_3165	0.83	+0.8
3,753,083	+		Sama_3165	0.83	-0.2
3,753,083	+		Sama_3165	0.83	-0.5
3,753,084	-		Sama_3165	0.83	-0.3
3,753,084	-		Sama_3165	0.83	+0.5
3,753,084	-		Sama_3165	0.83	-0.3
3,753,084	-		Sama_3165	0.83	+0.0
3,753,084	-		Sama_3165	0.83	+1.0
3,753,105	+		Sama_3165	0.85	+0.7
3,753,105	+		Sama_3165	0.85	+0.1
3,753,105	+		Sama_3165	0.85	+0.6
3,753,105	+		Sama_3165	0.85	-2.1
3,753,105	+		Sama_3165	0.85	-0.9
3,753,105	+		Sama_3165	0.85	-1.3
3,753,105	+		Sama_3165	0.85	-2.8
3,753,106	-		Sama_3165	0.85	-0.4
3,753,106	-		Sama_3165	0.85	-1.8
3,753,106	-		Sama_3165	0.85	-1.0
3,753,106	-		Sama_3165	0.85	-0.6
3,753,106	-		Sama_3165	0.85	+2.3
3,753,106	-		Sama_3165	0.85	+0.3
3,753,122	+		Sama_3165	0.86	+0.3
3,753,122	+		Sama_3165	0.86	-2.0
3,753,122	+		Sama_3165	0.86	-2.5
3,753,122	+		Sama_3165	0.86	+3.7
3,753,122	+		Sama_3165	0.86	+2.2
3,753,122	+		Sama_3165	0.86	+0.2
3,753,122	+		Sama_3165	0.86	-0.6
3,753,122	+		Sama_3165	0.86	-0.6
3,753,123	-		Sama_3165	0.86	+0.1
3,753,123	-		Sama_3165	0.86	+0.3
3,753,123	-		Sama_3165	0.86	-0.5
3,753,146	+		Sama_3165	0.88	+1.3
3,753,146	+		Sama_3165	0.88	-0.2
3,753,146	+		Sama_3165	0.88	+0.1
3,753,146	+		Sama_3165	0.88	-2.1
3,753,146	+		Sama_3165	0.88	-2.5
3,753,146	+		Sama_3165	0.88	+1.4
3,753,146	+		Sama_3165	0.88	-1.2
3,753,146	+		Sama_3165	0.88	-0.0
3,753,146	+		Sama_3165	0.88	+0.0
3,753,146	+		Sama_3165	0.88	-0.0
3,753,146	+		Sama_3165	0.88	-0.9
3,753,147	-		Sama_3165	0.88	+0.4
3,753,147	-		Sama_3165	0.88	-1.0
3,753,147	-		Sama_3165	0.88	+1.0
3,753,147	-		Sama_3165	0.88	+2.2
3,753,158	+		Sama_3165	0.89	-1.3
3,753,158	+		Sama_3165	0.89	-0.3
3,753,193	+				-1.0
3,753,202	+				-0.7
3,753,202	+				+0.3
3,753,306	-				+0.3
3,753,349	-				+0.7
3,753,351	+				+1.5
3,753,352	-				-1.5
3,753,359	+				-1.1
3,753,360	-				-0.1
3,753,360	-				-0.2
3,753,360	-				-1.1
3,753,360	-				-1.5
3,753,368	+				+1.3
3,753,368	+				+2.3
3,753,368	+				-0.0
3,753,369	-				+1.3
3,753,369	-				+0.8
3,753,369	-				+0.2
3,753,369	-				+0.1
3,753,391	-				-0.5
3,753,423	+				-0.2
3,753,423	+				+2.7
3,753,423	+				+0.3
3,753,424	-				-0.1
3,753,424	-				-1.7
3,753,424	-				+0.9
3,753,424	-				+0.1
3,753,424	-				-1.8
3,753,424	-				-1.3
3,753,466	+				+2.9
3,753,466	+				-1.1
3,753,466	+				+0.3
3,753,466	+				-0.0
3,753,466	+				+0.4
3,753,467	-				-0.4
3,753,467	-				+0.4
3,753,467	-				+0.4
3,753,467	-				-0.8
3,753,469	-				+1.9
3,753,528	-				+1.3
3,753,569	+				+1.8
3,753,570	-				-0.2
3,753,583	+				-1.1
3,753,595	-				-0.2
3,753,595	-				+0.3
3,753,651	+				+0.3
3,753,662	+				-0.9
3,753,662	+				+0.1
3,753,662	+				+1.4
3,753,663	-				+0.2
3,753,817	+		Sama_3166	0.17	-0.8
3,753,818	-		Sama_3166	0.17	+1.9
3,753,838	+		Sama_3166	0.19	-0.0
3,753,838	+		Sama_3166	0.19	-2.0
3,753,838	+		Sama_3166	0.19	+1.6
3,753,838	+		Sama_3166	0.19	-0.7
3,753,839	-		Sama_3166	0.19	+0.4
3,753,839	-		Sama_3166	0.19	+1.1
3,753,839	-		Sama_3166	0.19	-1.3
3,753,839	-		Sama_3166	0.19	-0.5
3,753,839	-		Sama_3166	0.19	-2.1
3,753,863	+		Sama_3166	0.20	+0.2
3,753,864	-		Sama_3166	0.20	-1.0
3,753,896	+		Sama_3166	0.23	-0.5
3,753,896	+		Sama_3166	0.23	-1.1
3,753,896	+		Sama_3166	0.23	-1.3
3,753,896	+		Sama_3166	0.23	-0.5
3,753,896	+		Sama_3166	0.23	-1.5
3,753,896	+		Sama_3166	0.23	-0.4
3,753,896	+		Sama_3166	0.23	+0.3
3,753,896	+		Sama_3166	0.23	+0.8
3,753,896	+		Sama_3166	0.23	+0.0
3,753,896	+		Sama_3166	0.23	+1.4
3,753,896	+		Sama_3166	0.23	+1.7
3,753,896	+		Sama_3166	0.23	-1.1
3,753,897	-		Sama_3166	0.23	+1.0
3,753,897	-		Sama_3166	0.23	+0.5
3,753,897	-		Sama_3166	0.23	+0.7
3,753,897	-		Sama_3166	0.23	-2.9
3,753,897	-		Sama_3166	0.23	-1.4
3,753,897	-		Sama_3166	0.23	-0.6
3,753,897	-		Sama_3166	0.23	-0.3
3,753,898	+		Sama_3166	0.23	-0.0
3,753,898	+		Sama_3166	0.23	+1.3
3,753,898	+		Sama_3166	0.23	-1.5
3,753,898	+		Sama_3166	0.23	-1.5
3,753,898	+		Sama_3166	0.23	-1.0
3,753,898	+		Sama_3166	0.23	-0.6
3,753,898	+		Sama_3166	0.23	-0.1
3,753,898	+		Sama_3166	0.23	+0.8
3,753,898	+		Sama_3166	0.23	-0.6
3,753,899	-		Sama_3166	0.23	+0.6
3,753,899	-		Sama_3166	0.23	-1.0
3,753,899	-		Sama_3166	0.23	-0.9
3,753,899	-		Sama_3166	0.23	-1.2
3,753,899	-		Sama_3166	0.23	-0.1
3,753,899	-		Sama_3166	0.23	-2.6
3,753,899	-		Sama_3166	0.23	+0.2
3,753,899	-		Sama_3166	0.23	-0.8
3,753,899	-		Sama_3166	0.23	+0.4
3,753,899	-		Sama_3166	0.23	-1.0
3,753,899	-		Sama_3166	0.23	+0.2
3,753,899	-		Sama_3166	0.23	-0.7
3,753,899	-		Sama_3166	0.23	+0.5
3,753,899	-		Sama_3166	0.23	+0.3
3,753,899	-		Sama_3166	0.23	-0.8
3,753,899	-		Sama_3166	0.23	-1.1
3,753,899	-		Sama_3166	0.23	+0.3
3,753,899	-		Sama_3166	0.23	-0.4
3,753,899	-		Sama_3166	0.23	-0.0
3,753,909	-		Sama_3166	0.24	-0.2
3,753,909	-		Sama_3166	0.24	-0.2
3,753,909	-		Sama_3166	0.24	+1.0
3,753,931	+		Sama_3166	0.25	+1.1
3,753,932	-		Sama_3166	0.25	-0.0
3,753,932	-		Sama_3166	0.25	-0.1
3,753,932	-		Sama_3166	0.25	-0.6
3,753,932	-		Sama_3166	0.25	-0.1
3,754,011	+		Sama_3166	0.31	-0.9
3,754,011	+		Sama_3166	0.31	-0.5
3,754,011	+		Sama_3166	0.31	+0.9
3,754,011	+		Sama_3166	0.31	-0.6
3,754,011	+		Sama_3166	0.31	+0.7
3,754,011	+		Sama_3166	0.31	-0.9
3,754,011	+		Sama_3166	0.31	-0.4
3,754,011	+		Sama_3166	0.31	-1.9
3,754,012	-		Sama_3166	0.31	+0.5
3,754,012	-		Sama_3166	0.31	+1.3
3,754,012	-		Sama_3166	0.31	-1.1
3,754,012	-		Sama_3166	0.31	+0.3
3,754,012	-		Sama_3166	0.31	+0.9
3,754,012	-		Sama_3166	0.31	+0.4
3,754,019	+		Sama_3166	0.32	-2.1
3,754,020	-		Sama_3166	0.32	+1.1
3,754,020	-		Sama_3166	0.32	+0.4
3,754,128	+		Sama_3166	0.40	+1.1
3,754,129	-		Sama_3166	0.40	+0.4
3,754,197	+		Sama_3166	0.45	-2.1
3,754,197	+		Sama_3166	0.45	-0.5
3,754,197	+		Sama_3166	0.45	+1.5
3,754,197	+		Sama_3166	0.45	-1.7
3,754,220	+		Sama_3166	0.46	+0.9
3,754,220	+		Sama_3166	0.46	+1.5
3,754,221	-		Sama_3166	0.46	+1.9
3,754,221	-		Sama_3166	0.46	-1.1
3,754,242	+		Sama_3166	0.48	-0.5
3,754,255	+		Sama_3166	0.49	+2.1
3,754,255	+		Sama_3166	0.49	+1.2
3,754,255	+		Sama_3166	0.49	+0.5
3,754,255	+		Sama_3166	0.49	-0.1
3,754,255	+		Sama_3166	0.49	-0.5
3,754,256	-		Sama_3166	0.49	-1.2
3,754,256	-		Sama_3166	0.49	+0.2
3,754,256	-		Sama_3166	0.49	+0.3
3,754,256	-		Sama_3166	0.49	-1.4
3,754,256	-		Sama_3166	0.49	+0.7
3,754,256	-		Sama_3166	0.49	+2.2
3,754,256	-		Sama_3166	0.49	-1.1
3,754,256	-		Sama_3166	0.49	+2.4
3,754,256	-		Sama_3166	0.49	-1.8
3,754,256	-		Sama_3166	0.49	+0.0
3,754,288	+		Sama_3166	0.51	+0.9
3,754,288	+		Sama_3166	0.51	-0.3
3,754,288	+		Sama_3166	0.51	+0.2
3,754,288	+		Sama_3166	0.51	+1.9
3,754,288	+		Sama_3166	0.51	+1.3
3,754,289	-		Sama_3166	0.51	+0.9
3,754,289	-		Sama_3166	0.51	-0.9
3,754,289	-		Sama_3166	0.51	+0.1
3,754,289	-		Sama_3166	0.51	+0.9
3,754,289	-		Sama_3166	0.51	+2.2
3,754,289	-		Sama_3166	0.51	+1.9
3,754,293	+		Sama_3166	0.52	+1.3
3,754,294	-		Sama_3166	0.52	+0.1
3,754,294	-		Sama_3166	0.52	-0.8