Strain Fitness in Shewanella amazonensis SB2B around Sama_2908

Experiment: NAG (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N)
3,455,959	+		Sama_2907	0.26	-0.3
3,456,000	+		Sama_2907	0.30	+2.2
3,456,000	+		Sama_2907	0.30	+0.0
3,456,025	+		Sama_2907	0.33	-1.1
3,456,026	-		Sama_2907	0.33	+0.1
3,456,026	-		Sama_2907	0.33	-1.3
3,456,026	-		Sama_2907	0.33	-0.8
3,456,030	+		Sama_2907	0.33	-2.2
3,456,030	+		Sama_2907	0.33	+0.6
3,456,030	+		Sama_2907	0.33	-0.5
3,456,077	-		Sama_2907	0.38	-1.7
3,456,089	+		Sama_2907	0.39	-0.6
3,456,090	-		Sama_2907	0.39	+1.4
3,456,112	+		Sama_2907	0.41	-0.3
3,456,113	-		Sama_2907	0.41	-0.1
3,456,183	-		Sama_2907	0.48	+0.2
3,456,191	-		Sama_2907	0.49	+2.2
3,456,191	-		Sama_2907	0.49	+1.1
3,456,203	-		Sama_2907	0.50	+2.4
3,456,219	+		Sama_2907	0.52	+0.6
3,456,219	+		Sama_2907	0.52	+0.3
3,456,219	+		Sama_2907	0.52	+0.6
3,456,219	+		Sama_2907	0.52	-0.8
3,456,219	+		Sama_2907	0.52	+0.3
3,456,219	+		Sama_2907	0.52	+0.6
3,456,219	+		Sama_2907	0.52	-0.0
3,456,220	-		Sama_2907	0.52	+0.3
3,456,220	-		Sama_2907	0.52	+1.3
3,456,220	-		Sama_2907	0.52	-1.5
3,456,222	+		Sama_2907	0.52	+1.9
3,456,222	+		Sama_2907	0.52	+1.2
3,456,222	+		Sama_2907	0.52	-1.3
3,456,223	-		Sama_2907	0.52	+1.1
3,456,223	-		Sama_2907	0.52	-1.1
3,456,223	-		Sama_2907	0.52	-1.2
3,456,230	-		Sama_2907	0.53	-1.1
3,456,272	-		Sama_2907	0.57	-0.2
3,456,272	-		Sama_2907	0.57	+0.1
3,456,288	+		Sama_2907	0.58	-2.0
3,456,289	-		Sama_2907	0.58	+0.2
3,456,289	-		Sama_2907	0.58	+0.4
3,456,297	+		Sama_2907	0.59	+0.8
3,456,300	+		Sama_2907	0.59	-1.3
3,456,300	+		Sama_2907	0.59	-0.1
3,456,300	+		Sama_2907	0.59	-0.1
3,456,300	+		Sama_2907	0.59	-1.2
3,456,301	-		Sama_2907	0.60	+1.3
3,456,301	-		Sama_2907	0.60	-0.1
3,456,301	-		Sama_2907	0.60	+1.2
3,456,301	-		Sama_2907	0.60	-1.4
3,456,301	-		Sama_2907	0.60	+1.3
3,456,303	+		Sama_2907	0.60	+0.7
3,456,303	+		Sama_2907	0.60	+0.1
3,456,303	+		Sama_2907	0.60	+1.0
3,456,304	-		Sama_2907	0.60	-0.5
3,456,304	-		Sama_2907	0.60	-2.6
3,456,304	-		Sama_2907	0.60	+0.1
3,456,304	-		Sama_2907	0.60	+0.1
3,456,304	-		Sama_2907	0.60	+0.1
3,456,342	+		Sama_2907	0.64	+0.1
3,456,342	+		Sama_2907	0.64	-1.1
3,456,342	+		Sama_2907	0.64	-0.5
3,456,342	+		Sama_2907	0.64	-1.0
3,456,342	+		Sama_2907	0.64	-0.0
3,456,342	+		Sama_2907	0.64	+3.4
3,456,343	-		Sama_2907	0.64	-0.4
3,456,343	-		Sama_2907	0.64	-0.7
3,456,343	-		Sama_2907	0.64	-0.3
3,456,343	-		Sama_2907	0.64	+1.0
3,456,343	-		Sama_2907	0.64	+0.8
3,456,343	-		Sama_2907	0.64	-0.6
3,456,345	+		Sama_2907	0.64	-0.1
3,456,346	-		Sama_2907	0.64	-0.2
3,456,402	+		Sama_2907	0.69	+0.4
3,456,403	-		Sama_2907	0.70	+1.8
3,456,420	+		Sama_2907	0.71	+0.3
3,456,420	+		Sama_2907	0.71	-0.7
3,456,420	+		Sama_2907	0.71	+0.1
3,456,420	+		Sama_2907	0.71	+0.0
3,456,421	-		Sama_2907	0.71	+1.2
3,456,421	-		Sama_2907	0.71	+0.3
3,456,460	+		Sama_2907	0.75	+0.1
3,456,460	+		Sama_2907	0.75	-0.6
3,456,460	+		Sama_2907	0.75	-1.0
3,456,460	+		Sama_2907	0.75	-0.6
3,456,461	-		Sama_2907	0.75	-1.2
3,456,461	-		Sama_2907	0.75	+2.7
3,456,461	-		Sama_2907	0.75	-1.2
3,456,480	+		Sama_2907	0.77	+1.3
3,456,480	+		Sama_2907	0.77	-0.5
3,456,480	+		Sama_2907	0.77	-1.3
3,456,480	+		Sama_2907	0.77	+0.5
3,456,480	+		Sama_2907	0.77	-0.1
3,456,481	-		Sama_2907	0.77	-0.3
3,456,481	-		Sama_2907	0.77	-0.6
3,456,481	-		Sama_2907	0.77	-0.8
3,456,481	-		Sama_2907	0.77	+0.1
3,456,481	-		Sama_2907	0.77	+0.4
3,456,498	+		Sama_2907	0.79	-1.6
3,456,498	+		Sama_2907	0.79	-2.1
3,456,505	-		Sama_2907	0.79	-0.0
3,456,505	-		Sama_2907	0.79	-0.6
3,456,516	+		Sama_2907	0.81	-0.6
3,456,522	+		Sama_2907	0.81	+0.6
3,456,523	-		Sama_2907	0.81	+1.3
3,456,523	-		Sama_2907	0.81	-0.4
3,456,551	+		Sama_2907	0.84	-2.0
3,456,552	-		Sama_2907	0.84	-1.2
3,456,552	-		Sama_2907	0.84	-0.2
3,456,589	+		Sama_2907	0.88	+3.6
3,456,589	+		Sama_2907	0.88	-1.3
3,456,590	-		Sama_2907	0.88	+0.3
3,456,590	-		Sama_2907	0.88	-0.9
3,456,590	-		Sama_2907	0.88	+0.0
3,456,593	+		Sama_2907	0.88	+2.4
3,456,593	+		Sama_2907	0.88	-0.0
3,456,593	+		Sama_2907	0.88	+0.8
3,456,594	-		Sama_2907	0.88	+0.2
3,456,594	-		Sama_2907	0.88	+2.9
3,456,599	+		Sama_2907	0.89	+1.4
3,456,599	+		Sama_2907	0.89	+0.4
3,456,600	-		Sama_2907	0.89	-0.5
3,456,670	-				+0.2
3,456,670	-				-1.1
3,456,671	+				-1.0
3,456,671	+				-0.4
3,456,671	+				-0.7
3,456,671	+				+1.8
3,456,672	-				+1.5
3,456,672	-				-1.1
3,456,672	-				+0.5
3,456,677	+				-1.8
3,456,677	+				-2.0
3,456,677	+				-0.4
3,456,677	+				-0.5
3,456,677	+				-0.4
3,456,677	+				+1.2
3,456,678	-				+0.4
3,456,678	-				+0.1
3,456,678	-				-1.0
3,456,693	+				-2.5
3,456,693	+				+0.6
3,456,694	-				+0.7
3,456,694	-				-0.4
3,456,699	+				-0.4
3,456,700	-				+0.8
3,456,709	+				+0.5
3,456,709	+				-0.0
3,456,710	-				+0.4
3,456,710	-				+0.2
3,456,710	-				+0.3
3,456,718	+				+1.0
3,456,718	+				-0.1
3,456,719	-				-0.2
3,456,734	+				+0.2
3,456,735	-				+1.0
3,456,735	-				-1.9
3,456,754	+				+0.4
3,456,754	+				-0.1
3,456,754	+				-1.9
3,456,755	-				-0.1
3,456,755	-				-0.3
3,456,887	+				+1.6
3,457,046	-		Sama_2908	0.11	+1.2
3,457,050	-		Sama_2908	0.11	+0.4
3,457,050	-		Sama_2908	0.11	-2.2
3,457,184	+		Sama_2908	0.19	+1.4
3,457,184	+		Sama_2908	0.19	+0.8
3,457,193	+		Sama_2908	0.19	+1.5
3,457,278	+		Sama_2908	0.24	-0.2
3,457,387	-		Sama_2908	0.30	+2.0
3,457,387	-		Sama_2908	0.30	+0.8
3,457,387	-		Sama_2908	0.30	-0.2
3,457,397	+		Sama_2908	0.31	-1.3
3,457,397	+		Sama_2908	0.31	-2.4
3,457,398	-		Sama_2908	0.31	+0.3
3,457,398	-		Sama_2908	0.31	-0.8
3,457,398	-		Sama_2908	0.31	-0.1
3,457,398	-		Sama_2908	0.31	+0.0
3,457,398	-		Sama_2908	0.31	+0.1
3,457,398	-		Sama_2908	0.31	+0.4
3,457,405	-		Sama_2908	0.31	-0.0
3,457,422	-		Sama_2908	0.32	-1.3
3,457,449	+		Sama_2908	0.34	+0.5
3,457,449	+		Sama_2908	0.34	-1.9
3,457,503	+		Sama_2908	0.37	+0.5
3,457,504	-		Sama_2908	0.37	-0.4
3,457,513	+		Sama_2908	0.37	+3.1
3,457,513	+		Sama_2908	0.37	+0.4
3,457,513	+		Sama_2908	0.37	+0.5
3,457,513	+		Sama_2908	0.37	+1.2
3,457,514	-		Sama_2908	0.37	+1.3
3,457,514	-		Sama_2908	0.37	+0.4
3,457,514	-		Sama_2908	0.37	-0.7
3,457,514	-		Sama_2908	0.37	+1.3
3,457,514	-		Sama_2908	0.37	-0.7
3,457,514	-		Sama_2908	0.37	-0.5
3,457,569	+		Sama_2908	0.41	+1.2
3,457,576	-		Sama_2908	0.41	-1.2
3,457,576	-		Sama_2908	0.41	+1.1
3,457,654	+		Sama_2908	0.45	+0.3
3,457,655	-		Sama_2908	0.45	-0.2
3,457,655	-		Sama_2908	0.45	+0.8
3,457,655	-		Sama_2908	0.45	-1.6
3,457,739	+		Sama_2908	0.50	+0.9
3,457,739	+		Sama_2908	0.50	+1.8
3,457,740	-		Sama_2908	0.50	-0.0
3,457,740	-		Sama_2908	0.50	+0.0
3,457,740	-		Sama_2908	0.50	-0.6
3,457,740	-		Sama_2908	0.50	+0.4
3,457,740	-		Sama_2908	0.50	+2.0
3,457,740	-		Sama_2908	0.50	+2.8
3,457,802	-		Sama_2908	0.54	+1.0
3,457,802	-		Sama_2908	0.54	+2.1
3,457,808	-		Sama_2908	0.54	+2.4
3,457,808	-		Sama_2908	0.54	-0.3
3,457,829	-		Sama_2908	0.55	-1.0
3,457,835	-		Sama_2908	0.55	+0.2
3,457,835	-		Sama_2908	0.55	-2.5
3,457,875	+		Sama_2908	0.58	+0.1
3,457,949	+		Sama_2908	0.62	+0.0
3,457,950	-		Sama_2908	0.62	-1.9
3,457,950	-		Sama_2908	0.62	-1.6
3,457,962	+		Sama_2908	0.63	-0.7
3,457,963	-		Sama_2908	0.63	+1.8
3,457,991	+		Sama_2908	0.64	+0.7
3,457,991	+		Sama_2908	0.64	+1.5
3,457,991	+		Sama_2908	0.64	+1.4
3,457,991	+		Sama_2908	0.64	+0.2
3,457,991	+		Sama_2908	0.64	+0.0
3,457,992	-		Sama_2908	0.64	+1.3
3,457,992	-		Sama_2908	0.64	+0.7
3,458,000	-		Sama_2908	0.65	-0.6
3,458,114	-		Sama_2908	0.71	+0.6
3,458,233	+		Sama_2908	0.78	+0.2
3,458,250	+		Sama_2908	0.79	-0.1
3,458,251	-		Sama_2908	0.79	+0.6
3,458,251	-		Sama_2908	0.79	+1.2
3,458,261	+		Sama_2908	0.79	+0.1
3,458,262	-		Sama_2908	0.79	+0.1
3,458,294	+		Sama_2908	0.81	-0.8
3,458,295	-		Sama_2908	0.81	-1.6
3,458,310	+		Sama_2908	0.82	-0.4
3,458,310	+		Sama_2908	0.82	+0.3
3,458,349	-		Sama_2908	0.84	+0.1
3,458,349	-		Sama_2908	0.84	+1.0
3,458,349	-		Sama_2908	0.84	+0.2
3,458,386	+		Sama_2908	0.86	-1.3
3,458,386	+		Sama_2908	0.86	-0.3
3,458,386	+		Sama_2908	0.86	+0.6
3,458,387	-		Sama_2908	0.86	+0.1
3,458,387	-		Sama_2908	0.86	+0.5
3,458,387	-		Sama_2908	0.86	+0.4
3,458,465	-				-0.4
3,458,527	+				-1.5
3,458,538	+				-0.3
3,458,540	+				+0.2
3,458,549	-				-1.4
3,458,647	+				-2.1
3,458,648	-				-0.2
3,458,648	-				-0.3
3,458,648	-				+0.6
3,458,648	-				+0.2
3,458,669	+				-1.0
3,458,669	+				-0.8
3,458,669	+				+0.2
3,458,669	+				+1.5
3,458,669	+				+0.4
3,458,669	+				-2.9
3,458,669	+				-0.7
3,458,670	-				+0.0
3,458,670	-				-0.6
3,458,670	-				-0.6
3,458,670	-				+0.0
3,458,670	-				-0.3
3,458,670	-				-0.2
3,458,705	+				+1.0
3,458,705	+				+2.2
3,458,705	+				+1.8
3,458,705	+				-1.1
3,458,706	-				+0.8
3,458,717	+				+0.4
3,458,821	+				-0.8
3,458,821	+				+0.5
3,458,860	+		Sama_2909	0.11	+0.4
3,458,861	-		Sama_2909	0.11	+0.6
3,458,877	+		Sama_2909	0.12	-1.4
3,458,878	-		Sama_2909	0.13	+0.5
3,458,881	+		Sama_2909	0.13	-3.0
3,458,883	+		Sama_2909	0.13	+2.6
3,458,884	-		Sama_2909	0.13	+0.1
3,458,896	+		Sama_2909	0.14	+0.4
3,458,896	+		Sama_2909	0.14	+1.4
3,458,977	+		Sama_2909	0.22	-1.0
3,459,000	+		Sama_2909	0.24	-0.3
3,459,001	-		Sama_2909	0.24	-2.2
3,459,112	+		Sama_2909	0.34	-0.3
3,459,112	+		Sama_2909	0.34	+0.4
3,459,112	+		Sama_2909	0.34	-1.1
3,459,113	-		Sama_2909	0.34	+0.3
3,459,175	+		Sama_2909	0.40	-0.6
3,459,175	+		Sama_2909	0.40	-0.9
3,459,176	-		Sama_2909	0.40	-0.5
3,459,245	+		Sama_2909	0.46	-0.5
3,459,245	+		Sama_2909	0.46	-1.7
3,459,246	-		Sama_2909	0.46	-0.4
3,459,248	+		Sama_2909	0.46	+0.8
3,459,248	+		Sama_2909	0.46	-0.1
3,459,249	-		Sama_2909	0.47	-0.4
3,459,262	+		Sama_2909	0.48	+0.2
3,459,263	-		Sama_2909	0.48	-0.1
3,459,263	-		Sama_2909	0.48	+2.2
3,459,263	-		Sama_2909	0.48	-0.1
3,459,271	+		Sama_2909	0.49	+2.3
3,459,271	+		Sama_2909	0.49	-0.5
3,459,305	+		Sama_2909	0.52	-2.2
3,459,311	+		Sama_2909	0.52	+0.8
3,459,312	-		Sama_2909	0.52	-0.8
3,459,312	-		Sama_2909	0.52	-0.0
3,459,366	-		Sama_2909	0.57	+2.7
3,459,398	-		Sama_2909	0.60	+0.1
3,459,398	-		Sama_2909	0.60	+1.7
3,459,520	-		Sama_2909	0.71	-0.1
3,459,520	-		Sama_2909	0.71	+0.3
3,459,520	-		Sama_2909	0.71	+0.7
3,459,623	+		Sama_2909	0.81	-2.9
3,459,623	+		Sama_2909	0.81	-0.0
3,459,624	-		Sama_2909	0.81	+1.5
3,459,624	-		Sama_2909	0.81	+1.2
3,459,624	-		Sama_2909	0.81	+0.5