Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2592 and Sama_2593 are separated by 115 nucleotides Sama_2593 and lipB are separated by 94 nucleotides lipB and Sama_2595 are separated by 1 nucleotides
Sama_2592: Sama_2592 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 3,100,253 to 3,101,431
_2592
Sama_2593: Sama_2593 - hypothetical protein (RefSeq), at 3,101,547 to 3,101,813
_2593
Sama_2594: lipB - lipoyltransferase (RefSeq), at 3,101,908 to 3,102,558
lipB
Sama_2595: Sama_2595 - lipoyl synthase (RefSeq), at 3,102,560 to 3,103,525
_2595
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-1
0
1
2 at 3101.430 kb on - strand at 3101.430 kb on - strand at 3101.510 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.815 kb on + strand at 3101.816 kb on - strand at 3101.832 kb on + strand at 3101.832 kb on + strand at 3101.832 kb on + strand at 3101.870 kb on + strand at 3101.870 kb on + strand at 3102.548 kb on + strand at 3103.523 kb on + strand at 3103.523 kb on + strand at 3103.523 kb on + strand at 3103.524 kb on - strand at 3103.524 kb on - strand at 3103.533 kb on + strand at 3103.533 kb on + strand at 3103.533 kb on + strand at 3103.534 kb on - strand at 3103.534 kb on - strand at 3103.539 kb on + strand at 3103.539 kb on + strand at 3103.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 3,101,430 - +0.5 3,101,430 - -0.6 3,101,510 + +0.9 3,101,811 + -0.6 3,101,811 + -0.2 3,101,811 + +0.9 3,101,811 + -0.0 3,101,812 - -0.3 3,101,812 - -0.7 3,101,812 - -1.6 3,101,812 - -1.1 3,101,812 - -1.1 3,101,815 + +0.5 3,101,816 - -0.9 3,101,832 + -0.7 3,101,832 + -0.6 3,101,832 + +2.7 3,101,870 + -0.1 3,101,870 + -0.7 3,102,548 + +0.9 3,103,523 + +0.2 3,103,523 + -0.4 3,103,523 + +0.6 3,103,524 - -1.3 3,103,524 - +1.7 3,103,533 + +1.0 3,103,533 + +0.4 3,103,533 + -1.3 3,103,534 - +0.6 3,103,534 - -0.0 3,103,539 + +1.4 3,103,539 + +0.9 3,103,539 + -1.1
Or see this region's nucleotide sequence