Strain Fitness in Shewanella amazonensis SB2B around Sama_2594

Experiment: NAG (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_2592 and Sama_2593 are separated by 115 nucleotidesSama_2593 and lipB are separated by 94 nucleotideslipB and Sama_2595 are separated by 1 nucleotides Sama_2592: Sama_2592 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 3,100,253 to 3,101,431 _2592 Sama_2593: Sama_2593 - hypothetical protein (RefSeq), at 3,101,547 to 3,101,813 _2593 Sama_2594: lipB - lipoyltransferase (RefSeq), at 3,101,908 to 3,102,558 lipB Sama_2595: Sama_2595 - lipoyl synthase (RefSeq), at 3,102,560 to 3,103,525 _2595 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -1 0 1 2at 3101.430 kb on - strandat 3101.430 kb on - strandat 3101.510 kb on + strandat 3101.811 kb on + strandat 3101.811 kb on + strandat 3101.811 kb on + strandat 3101.811 kb on + strandat 3101.812 kb on - strandat 3101.812 kb on - strandat 3101.812 kb on - strandat 3101.812 kb on - strandat 3101.812 kb on - strandat 3101.815 kb on + strandat 3101.816 kb on - strandat 3101.832 kb on + strandat 3101.832 kb on + strandat 3101.832 kb on + strandat 3101.870 kb on + strandat 3101.870 kb on + strandat 3102.548 kb on + strandat 3103.523 kb on + strandat 3103.523 kb on + strandat 3103.523 kb on + strandat 3103.524 kb on - strandat 3103.524 kb on - strandat 3103.533 kb on + strandat 3103.533 kb on + strandat 3103.533 kb on + strandat 3103.534 kb on - strandat 3103.534 kb on - strandat 3103.539 kb on + strandat 3103.539 kb on + strandat 3103.539 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
remove
3,101,430 - +0.5
3,101,430 - -0.6
3,101,510 + +0.9
3,101,811 + -0.6
3,101,811 + -0.2
3,101,811 + +0.9
3,101,811 + -0.0
3,101,812 - -0.3
3,101,812 - -0.7
3,101,812 - -1.6
3,101,812 - -1.1
3,101,812 - -1.1
3,101,815 + +0.5
3,101,816 - -0.9
3,101,832 + -0.7
3,101,832 + -0.6
3,101,832 + +2.7
3,101,870 + -0.1
3,101,870 + -0.7
3,102,548 + +0.9
3,103,523 + +0.2
3,103,523 + -0.4
3,103,523 + +0.6
3,103,524 - -1.3
3,103,524 - +1.7
3,103,533 + +1.0
3,103,533 + +0.4
3,103,533 + -1.3
3,103,534 - +0.6
3,103,534 - -0.0
3,103,539 + +1.4
3,103,539 + +0.9
3,103,539 + -1.1

Or see this region's nucleotide sequence