Strain Fitness in Shewanella amazonensis SB2B around Sama_2568

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemA and Sama_2568 are separated by 229 nucleotidesSama_2568 and ipk overlap by 4 nucleotidesipk and Sama_2570 are separated by 79 nucleotides Sama_2567: hemA - glutamyl-tRNA reductase (RefSeq), at 3,073,056 to 3,074,306 hemA Sama_2568: Sama_2568 - outer membrane lipoprotein LolB (RefSeq), at 3,074,536 to 3,075,159 _2568 Sama_2569: ipk - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (RefSeq), at 3,075,156 to 3,076,007 ipk Sama_2570: Sama_2570 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,076,087 to 3,077,034 _2570 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1at 3074.356 kb on - strandat 3074.383 kb on + strandat 3074.383 kb on + strandat 3074.383 kb on + strandat 3074.383 kb on + strandat 3074.383 kb on + strandat 3074.383 kb on + strandat 3074.384 kb on - strandat 3074.384 kb on - strandat 3074.384 kb on - strandat 3074.389 kb on + strandat 3074.486 kb on - strandat 3074.505 kb on + strandat 3074.506 kb on - strandat 3074.510 kb on + strandat 3074.510 kb on + strandat 3074.518 kb on + strandat 3074.518 kb on + strandat 3074.518 kb on + strandat 3074.522 kb on + strandat 3074.533 kb on + strandat 3074.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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3,074,356 - -1.6
3,074,383 + +0.7
3,074,383 + -2.2
3,074,383 + -2.1
3,074,383 + -0.8
3,074,383 + -0.6
3,074,383 + -1.5
3,074,384 - -0.5
3,074,384 - +0.7
3,074,384 - -0.5
3,074,389 + -2.2
3,074,486 - -0.9
3,074,505 + +0.7
3,074,506 - -1.6
3,074,510 + -0.4
3,074,510 + -0.6
3,074,518 + -1.2
3,074,518 + -1.0
3,074,518 + -1.6
3,074,522 + -1.6
3,074,533 + -1.1
3,074,533 + +0.5

Or see this region's nucleotide sequence