Strain Fitness in Shewanella amazonensis SB2B around Sama_1425

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1423 and Sama_1424 overlap by 7 nucleotidesSama_1424 and sdhA are separated by 1 nucleotidessdhA and sdhB are separated by 12 nucleotidessdhB and sucA are separated by 192 nucleotides Sama_1423: Sama_1423 - succinate dehydrogenase, cytochrome b556 subunit (RefSeq), at 1,733,105 to 1,733,500 _1423 Sama_1424: Sama_1424 - succinate dehydrogenase, cytochrome b subunit (RefSeq), at 1,733,494 to 1,733,841 _1424 Sama_1425: sdhA - succinate dehydrogenase flavoprotein subunit (RefSeq), at 1,733,843 to 1,735,609 sdhA Sama_1426: sdhB - succinate dehydrogenase iron-sulfur subunit (RefSeq), at 1,735,622 to 1,736,329 sdhB Sama_1427: sucA - 2-oxoglutarate dehydrogenase E1 component (RefSeq), at 1,736,522 to 1,739,344 sucA Position (kb) 1733 1734 1735 1736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1732.850 kb on - strandat 1732.878 kb on + strandat 1732.879 kb on - strandat 1732.879 kb on - strandat 1732.879 kb on - strandat 1732.879 kb on - strandat 1732.879 kb on - strandat 1732.879 kb on - strandat 1732.884 kb on + strandat 1732.885 kb on - strandat 1732.959 kb on + strandat 1733.012 kb on + strandat 1733.088 kb on + strandat 1735.607 kb on + strandat 1735.607 kb on + strandat 1735.607 kb on + strandat 1736.346 kb on + strandat 1736.346 kb on + strandat 1736.355 kb on + strandat 1736.355 kb on + strandat 1736.355 kb on + strandat 1736.355 kb on + strandat 1736.361 kb on + strandat 1736.363 kb on + strandat 1736.466 kb on + strandat 1736.473 kb on + strandat 1736.473 kb on + strandat 1736.473 kb on + strandat 1736.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,732,850 - -0.0
1,732,878 + -0.6
1,732,879 - -0.3
1,732,879 - -0.5
1,732,879 - +0.2
1,732,879 - +2.2
1,732,879 - +0.9
1,732,879 - +0.8
1,732,884 + +0.8
1,732,885 - +1.7
1,732,959 + -0.3
1,733,012 + +0.3
1,733,088 + -0.6
1,735,607 + -1.5
1,735,607 + -2.9
1,735,607 + -1.0
1,736,346 + +0.4
1,736,346 + -1.3
1,736,355 + -1.1
1,736,355 + -2.2
1,736,355 + -0.9
1,736,355 + +0.0
1,736,361 + -1.5
1,736,363 + -1.4
1,736,466 + -2.8
1,736,473 + -1.8
1,736,473 + -0.4
1,736,473 + -2.3
1,736,499 + +0.4

Or see this region's nucleotide sequence