Strain Fitness in Shewanella amazonensis SB2B around Sama_0513

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0512 and Sama_0513 are separated by 202 nucleotidesSama_0513 and Sama_0514 are separated by 11 nucleotides Sama_0512: Sama_0512 - ATP-dependent RNA helicase DeaD (RefSeq), at 628,459 to 630,372 _0512 Sama_0513: Sama_0513 - peptidase M28 (RefSeq), at 630,575 to 631,600 _0513 Sama_0514: Sama_0514 - excinuclease ABC, A subunit (RefSeq), at 631,612 to 634,440 _0514 Position (kb) 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 629.613 kb on + strand, within Sama_0512at 629.631 kb on + strand, within Sama_0512at 629.663 kb on - strand, within Sama_0512at 629.989 kb on + strand, within Sama_0512at 629.990 kb on - strand, within Sama_0512at 630.026 kb on + strand, within Sama_0512at 630.026 kb on + strand, within Sama_0512at 630.026 kb on + strand, within Sama_0512at 630.027 kb on - strand, within Sama_0512at 630.027 kb on - strand, within Sama_0512at 630.044 kb on + strand, within Sama_0512at 630.045 kb on - strand, within Sama_0512at 630.045 kb on - strand, within Sama_0512at 630.045 kb on - strand, within Sama_0512at 630.045 kb on - strand, within Sama_0512at 630.048 kb on + strand, within Sama_0512at 630.049 kb on - strand, within Sama_0512at 630.049 kb on - strand, within Sama_0512at 630.055 kb on + strand, within Sama_0512at 630.056 kb on - strand, within Sama_0512at 630.056 kb on - strand, within Sama_0512at 630.109 kb on + strand, within Sama_0512at 630.214 kb on - strandat 630.385 kb on - strandat 630.416 kb on + strandat 630.614 kb on + strandat 630.614 kb on + strandat 630.615 kb on - strandat 630.621 kb on + strandat 630.622 kb on - strandat 630.622 kb on - strandat 630.622 kb on - strandat 630.623 kb on + strandat 630.633 kb on - strandat 630.633 kb on - strandat 630.633 kb on - strandat 630.633 kb on - strandat 630.633 kb on - strandat 630.674 kb on - strandat 630.691 kb on - strand, within Sama_0513at 630.691 kb on - strand, within Sama_0513at 630.717 kb on + strand, within Sama_0513at 630.739 kb on + strand, within Sama_0513at 630.751 kb on - strand, within Sama_0513at 630.771 kb on + strand, within Sama_0513at 630.771 kb on + strand, within Sama_0513at 630.772 kb on - strand, within Sama_0513at 630.772 kb on - strand, within Sama_0513at 630.772 kb on - strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.897 kb on + strand, within Sama_0513at 630.898 kb on - strand, within Sama_0513at 630.906 kb on + strand, within Sama_0513at 630.906 kb on + strand, within Sama_0513at 630.907 kb on - strand, within Sama_0513at 630.932 kb on - strand, within Sama_0513at 630.959 kb on + strand, within Sama_0513at 630.959 kb on + strand, within Sama_0513at 630.960 kb on - strand, within Sama_0513at 630.960 kb on - strand, within Sama_0513at 630.960 kb on - strand, within Sama_0513at 630.960 kb on - strand, within Sama_0513at 630.960 kb on - strand, within Sama_0513at 631.003 kb on - strand, within Sama_0513at 631.003 kb on - strand, within Sama_0513at 631.171 kb on - strand, within Sama_0513at 631.181 kb on + strand, within Sama_0513at 631.181 kb on + strand, within Sama_0513at 631.181 kb on + strand, within Sama_0513at 631.181 kb on + strand, within Sama_0513at 631.182 kb on - strand, within Sama_0513at 631.182 kb on - strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.226 kb on + strand, within Sama_0513at 631.227 kb on - strand, within Sama_0513at 631.227 kb on - strand, within Sama_0513at 631.613 kb on + strandat 631.614 kb on - strandat 631.633 kb on + strandat 631.669 kb on + strandat 631.786 kb on + strandat 631.786 kb on + strandat 631.786 kb on + strandat 631.786 kb on + strandat 631.786 kb on + strandat 631.787 kb on - strandat 631.787 kb on - strandat 631.787 kb on - strandat 631.787 kb on - strandat 631.787 kb on - strandat 631.787 kb on - strandat 631.819 kb on + strandat 631.819 kb on + strandat 631.819 kb on + strandat 631.819 kb on + strandat 631.820 kb on - strandat 631.820 kb on - strandat 631.840 kb on - strandat 631.840 kb on - strandat 631.878 kb on + strandat 631.879 kb on - strandat 631.879 kb on - strandat 631.879 kb on - strandat 631.879 kb on - strandat 631.879 kb on - strandat 631.880 kb on + strandat 631.880 kb on + strandat 631.880 kb on + strandat 631.880 kb on + strandat 631.881 kb on - strandat 631.881 kb on - strandat 631.881 kb on - strandat 631.881 kb on - strandat 631.881 kb on - strandat 631.927 kb on + strand, within Sama_0514at 631.982 kb on + strand, within Sama_0514at 631.982 kb on + strand, within Sama_0514at 631.982 kb on + strand, within Sama_0514at 631.982 kb on + strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 631.983 kb on - strand, within Sama_0514at 632.102 kb on + strand, within Sama_0514at 632.102 kb on + strand, within Sama_0514at 632.103 kb on - strand, within Sama_0514at 632.103 kb on - strand, within Sama_0514at 632.103 kb on - strand, within Sama_0514at 632.129 kb on + strand, within Sama_0514at 632.130 kb on - strand, within Sama_0514at 632.130 kb on - strand, within Sama_0514at 632.130 kb on - strand, within Sama_0514at 632.142 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.162 kb on + strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.163 kb on - strand, within Sama_0514at 632.188 kb on + strand, within Sama_0514at 632.188 kb on + strand, within Sama_0514at 632.188 kb on + strand, within Sama_0514at 632.189 kb on - strand, within Sama_0514at 632.189 kb on - strand, within Sama_0514at 632.189 kb on - strand, within Sama_0514at 632.189 kb on - strand, within Sama_0514at 632.196 kb on + strand, within Sama_0514at 632.196 kb on + strand, within Sama_0514at 632.196 kb on + strand, within Sama_0514at 632.196 kb on + strand, within Sama_0514at 632.196 kb on + strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.197 kb on - strand, within Sama_0514at 632.242 kb on - strand, within Sama_0514at 632.330 kb on + strand, within Sama_0514at 632.330 kb on + strand, within Sama_0514at 632.330 kb on + strand, within Sama_0514at 632.331 kb on - strand, within Sama_0514at 632.331 kb on - strand, within Sama_0514at 632.331 kb on - strand, within Sama_0514at 632.331 kb on - strand, within Sama_0514at 632.334 kb on + strand, within Sama_0514at 632.334 kb on + strand, within Sama_0514at 632.334 kb on + strand, within Sama_0514at 632.335 kb on - strand, within Sama_0514at 632.423 kb on + strand, within Sama_0514at 632.423 kb on + strand, within Sama_0514at 632.423 kb on + strand, within Sama_0514at 632.423 kb on + strand, within Sama_0514at 632.423 kb on + strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.424 kb on - strand, within Sama_0514at 632.535 kb on + strand, within Sama_0514at 632.535 kb on + strand, within Sama_0514at 632.535 kb on + strand, within Sama_0514at 632.539 kb on + strand, within Sama_0514at 632.539 kb on + strand, within Sama_0514at 632.539 kb on + strand, within Sama_0514at 632.539 kb on + strand, within Sama_0514at 632.540 kb on - strand, within Sama_0514at 632.578 kb on - strand, within Sama_0514at 632.578 kb on - strand, within Sama_0514at 632.580 kb on + strand, within Sama_0514at 632.580 kb on + strand, within Sama_0514at 632.580 kb on + strand, within Sama_0514at 632.580 kb on + strand, within Sama_0514at 632.580 kb on + strand, within Sama_0514at 632.581 kb on - strand, within Sama_0514

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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629,613 + Sama_0512 0.60 -0.3
629,631 + Sama_0512 0.61 -0.0
629,663 - Sama_0512 0.63 +1.7
629,989 + Sama_0512 0.80 +1.0
629,990 - Sama_0512 0.80 +1.0
630,026 + Sama_0512 0.82 +1.6
630,026 + Sama_0512 0.82 +1.3
630,026 + Sama_0512 0.82 -0.2
630,027 - Sama_0512 0.82 +1.7
630,027 - Sama_0512 0.82 +1.4
630,044 + Sama_0512 0.83 +2.3
630,045 - Sama_0512 0.83 +1.4
630,045 - Sama_0512 0.83 +0.2
630,045 - Sama_0512 0.83 +2.5
630,045 - Sama_0512 0.83 +1.2
630,048 + Sama_0512 0.83 +2.2
630,049 - Sama_0512 0.83 +1.8
630,049 - Sama_0512 0.83 +2.7
630,055 + Sama_0512 0.83 +0.7
630,056 - Sama_0512 0.83 +2.7
630,056 - Sama_0512 0.83 +0.2
630,109 + Sama_0512 0.86 +3.0
630,214 - +2.0
630,385 - +1.0
630,416 + -0.2
630,614 + -0.7
630,614 + +0.4
630,615 - -0.5
630,621 + +1.5
630,622 - +1.2
630,622 - +0.8
630,622 - -0.2
630,623 + +1.0
630,633 - +0.6
630,633 - -0.1
630,633 - -1.2
630,633 - +0.6
630,633 - -0.9
630,674 - -1.5
630,691 - Sama_0513 0.11 +0.4
630,691 - Sama_0513 0.11 -0.4
630,717 + Sama_0513 0.14 -0.1
630,739 + Sama_0513 0.16 -0.3
630,751 - Sama_0513 0.17 -0.6
630,771 + Sama_0513 0.19 +0.2
630,771 + Sama_0513 0.19 +0.1
630,772 - Sama_0513 0.19 -0.0
630,772 - Sama_0513 0.19 +1.1
630,772 - Sama_0513 0.19 +0.9
630,897 + Sama_0513 0.31 -0.3
630,897 + Sama_0513 0.31 +1.1
630,897 + Sama_0513 0.31 +1.7
630,897 + Sama_0513 0.31 +1.0
630,897 + Sama_0513 0.31 +0.2
630,897 + Sama_0513 0.31 +2.1
630,898 - Sama_0513 0.31 +1.5
630,906 + Sama_0513 0.32 +3.1
630,906 + Sama_0513 0.32 +0.7
630,907 - Sama_0513 0.32 +2.4
630,932 - Sama_0513 0.35 +0.8
630,959 + Sama_0513 0.37 -0.8
630,959 + Sama_0513 0.37 +1.5
630,960 - Sama_0513 0.38 -2.7
630,960 - Sama_0513 0.38 -0.2
630,960 - Sama_0513 0.38 -0.0
630,960 - Sama_0513 0.38 -0.5
630,960 - Sama_0513 0.38 -1.0
631,003 - Sama_0513 0.42 -0.7
631,003 - Sama_0513 0.42 +0.3
631,171 - Sama_0513 0.58 -0.5
631,181 + Sama_0513 0.59 +2.3
631,181 + Sama_0513 0.59 +1.3
631,181 + Sama_0513 0.59 +1.4
631,181 + Sama_0513 0.59 +0.0
631,182 - Sama_0513 0.59 +2.8
631,182 - Sama_0513 0.59 +0.6
631,226 + Sama_0513 0.63 -0.4
631,226 + Sama_0513 0.63 -0.6
631,226 + Sama_0513 0.63 -2.5
631,226 + Sama_0513 0.63 +2.6
631,226 + Sama_0513 0.63 +0.6
631,226 + Sama_0513 0.63 -1.3
631,226 + Sama_0513 0.63 +1.7
631,226 + Sama_0513 0.63 +0.8
631,227 - Sama_0513 0.64 -1.8
631,227 - Sama_0513 0.64 -0.3
631,613 + +2.7
631,614 - +0.0
631,633 + -1.0
631,669 + +0.5
631,786 + +0.6
631,786 + +1.0
631,786 + -0.5
631,786 + -1.8
631,786 + -0.3
631,787 - +1.3
631,787 - -1.4
631,787 - -0.1
631,787 - -0.5
631,787 - -0.6
631,787 - +1.8
631,819 + -0.8
631,819 + -1.1
631,819 + +0.9
631,819 + -1.2
631,820 - -1.1
631,820 - -1.3
631,840 - +0.1
631,840 - -0.3
631,878 + -1.9
631,879 - -2.0
631,879 - +0.6
631,879 - -0.6
631,879 - +0.4
631,879 - -0.4
631,880 + -0.2
631,880 + -1.7
631,880 + +2.7
631,880 + -2.2
631,881 - -0.0
631,881 - -0.2
631,881 - +0.3
631,881 - +1.7
631,881 - +1.6
631,927 + Sama_0514 0.11 +0.1
631,982 + Sama_0514 0.13 -0.5
631,982 + Sama_0514 0.13 +0.4
631,982 + Sama_0514 0.13 -1.5
631,982 + Sama_0514 0.13 +0.1
631,983 - Sama_0514 0.13 -0.2
631,983 - Sama_0514 0.13 +3.0
631,983 - Sama_0514 0.13 -1.0
631,983 - Sama_0514 0.13 -0.1
631,983 - Sama_0514 0.13 -1.5
631,983 - Sama_0514 0.13 +1.5
632,102 + Sama_0514 0.17 -1.1
632,102 + Sama_0514 0.17 -1.4
632,103 - Sama_0514 0.17 +1.3
632,103 - Sama_0514 0.17 -2.2
632,103 - Sama_0514 0.17 +1.7
632,129 + Sama_0514 0.18 +1.0
632,130 - Sama_0514 0.18 -0.3
632,130 - Sama_0514 0.18 +0.6
632,130 - Sama_0514 0.18 -1.0
632,142 + Sama_0514 0.19 -0.8
632,162 + Sama_0514 0.19 +0.3
632,162 + Sama_0514 0.19 +0.9
632,162 + Sama_0514 0.19 -1.4
632,162 + Sama_0514 0.19 +0.5
632,162 + Sama_0514 0.19 -0.6
632,162 + Sama_0514 0.19 +0.8
632,162 + Sama_0514 0.19 +0.1
632,162 + Sama_0514 0.19 -0.1
632,162 + Sama_0514 0.19 -2.8
632,162 + Sama_0514 0.19 +0.1
632,162 + Sama_0514 0.19 -2.3
632,162 + Sama_0514 0.19 +0.7
632,162 + Sama_0514 0.19 -2.2
632,162 + Sama_0514 0.19 -2.4
632,162 + Sama_0514 0.19 +0.1
632,163 - Sama_0514 0.19 +0.6
632,163 - Sama_0514 0.19 -0.3
632,163 - Sama_0514 0.19 -0.0
632,163 - Sama_0514 0.19 -0.5
632,163 - Sama_0514 0.19 -0.1
632,163 - Sama_0514 0.19 +0.4
632,163 - Sama_0514 0.19 -2.3
632,163 - Sama_0514 0.19 -1.6
632,163 - Sama_0514 0.19 +0.1
632,163 - Sama_0514 0.19 +0.4
632,163 - Sama_0514 0.19 +0.4
632,163 - Sama_0514 0.19 +0.3
632,163 - Sama_0514 0.19 +0.2
632,163 - Sama_0514 0.19 +0.1
632,163 - Sama_0514 0.19 +3.0
632,163 - Sama_0514 0.19 -2.6
632,163 - Sama_0514 0.19 -1.7
632,188 + Sama_0514 0.20 -2.2
632,188 + Sama_0514 0.20 -0.5
632,188 + Sama_0514 0.20 -0.1
632,189 - Sama_0514 0.20 +0.5
632,189 - Sama_0514 0.20 -2.3
632,189 - Sama_0514 0.20 -2.4
632,189 - Sama_0514 0.20 +1.1
632,196 + Sama_0514 0.21 -3.2
632,196 + Sama_0514 0.21 +1.0
632,196 + Sama_0514 0.21 +0.1
632,196 + Sama_0514 0.21 -0.6
632,196 + Sama_0514 0.21 +1.2
632,197 - Sama_0514 0.21 -1.1
632,197 - Sama_0514 0.21 +0.1
632,197 - Sama_0514 0.21 +2.1
632,197 - Sama_0514 0.21 -1.7
632,197 - Sama_0514 0.21 -3.2
632,197 - Sama_0514 0.21 +0.9
632,197 - Sama_0514 0.21 -0.5
632,242 - Sama_0514 0.22 -1.0
632,330 + Sama_0514 0.25 -0.1
632,330 + Sama_0514 0.25 -1.3
632,330 + Sama_0514 0.25 -0.5
632,331 - Sama_0514 0.25 +2.6
632,331 - Sama_0514 0.25 -1.2
632,331 - Sama_0514 0.25 +0.4
632,331 - Sama_0514 0.25 -0.1
632,334 + Sama_0514 0.26 -1.1
632,334 + Sama_0514 0.26 +0.5
632,334 + Sama_0514 0.26 -0.8
632,335 - Sama_0514 0.26 -0.6
632,423 + Sama_0514 0.29 -0.6
632,423 + Sama_0514 0.29 -0.8
632,423 + Sama_0514 0.29 +2.5
632,423 + Sama_0514 0.29 -0.4
632,423 + Sama_0514 0.29 +1.0
632,424 - Sama_0514 0.29 -0.9
632,424 - Sama_0514 0.29 -0.1
632,424 - Sama_0514 0.29 -0.3
632,424 - Sama_0514 0.29 -1.1
632,424 - Sama_0514 0.29 +0.0
632,424 - Sama_0514 0.29 +0.1
632,424 - Sama_0514 0.29 +4.8
632,424 - Sama_0514 0.29 +2.2
632,535 + Sama_0514 0.33 -0.9
632,535 + Sama_0514 0.33 -0.7
632,535 + Sama_0514 0.33 -1.4
632,539 + Sama_0514 0.33 +0.2
632,539 + Sama_0514 0.33 +0.4
632,539 + Sama_0514 0.33 -0.0
632,539 + Sama_0514 0.33 -1.1
632,540 - Sama_0514 0.33 -0.4
632,578 - Sama_0514 0.34 -1.7
632,578 - Sama_0514 0.34 -0.4
632,580 + Sama_0514 0.34 +0.6
632,580 + Sama_0514 0.34 -1.3
632,580 + Sama_0514 0.34 -0.3
632,580 + Sama_0514 0.34 -1.2
632,580 + Sama_0514 0.34 -0.2
632,581 - Sama_0514 0.34 +1.6

Or see this region's nucleotide sequence